Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003922 [exp] 311 / 1e-103 AT3G26010 60 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037467 [exp] 311 / 2e-102 AT3G26010 61 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028682 [exp] 172 / 8e-50 AT5G49610 62 / 2e-10 F-box family protein (.1) Lus10000860 [exp] 162 / 1e-45 AT5G49610 52 / 3e-07 F-box family protein (.1) Lus10019151 [exp] 107 / 8e-27 ND / Lus10036954 [exp] 108 / 1e-26 ND 48 / 5e-06 Lus10006880 [exp] 71 / 1e-13 ND / Lus10014682 [exp] 65 / 8e-12 ND 37 / 0.006 Lus10037105 [exp] 0 / 1 ND 44 / 1e-05
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004800 [exp] 44 / 0.0002 AT5G49610 65 / 3e-11 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003923 pacid=23166315 polypeptide=Lus10003923 locus=Lus10003923.g ID=Lus10003923.BGIv1.0 annot-version=v1.0 ATGGCTTGCTCTTGGGCACCCGTGACATGGGCTACGGTGAAAGATACTGCATTTGCAACCCGATCACTAAGAAATGGCTCGATCTTCCACCGTTCCCTCC TTATGAAAACAATATTGATGTTAAAGTTGGTTTCTGTCTCTGATCCATTCTACAATTTGAATGAGGATGATGGTTCTGTCGTTGTGAATAGTCGATTCAG ATTCAAGGTGGTTCGTCTGGTCGCCACTCGTTGGAATATGGAGGATGAGGATGGAGATATTCACAACGTTGATGTGGAGGTGTTCTCGTCGGAAACTGGA TGCTGGACTACTACTTATCGAGTACCGTTACCGGGCCATATCCATTGTATGCTCGAAATCCTCTTCGGTGGCGTACCCATGGTTCCTTACAATGGGAAGC TCTATTGGATTGCAGAAGAATGTTGTGATTTTCTGGTCTATGATACAAACAAGAATGAGTTTGTCATGGACCGTCTCGATCCTCCTTCTGAGGCATTGCG ATATGGCCCGTATGATGGGAAGATAATGCGATACGAAGGCCTTAGCTTATGTGAAGGCTCGTTATGGGTAGCGCAAAATCGTGGTACTCAACTAAGAGTA TTCGTGCTTGCGGATGGTAAGTGGTCTATCAAGCATGACGTTGATATGTTTGATGATATGGAATGGAGCTGGATGAAGGAGGAGGATGAGATTTTCTCAA CTTCGTCCTCTCGGGAACCAAAATTCCTCTATATGCATCCCAGTGATCCCATGGTTGGGTACATGTCGACCGAGTCGATGTTGCTAGAGTTCAATTTCGC AAGCGGAACCGTGAAAGTGCTAATCGACATCGAGTGTGCGAGTCGTGCCCGTACCATGACTTCTATGTGCAGCCTGTTTATCTTCCTCTTTGGCCCACCC ATTGCCGTCGCTTCGAGCTGCTTGAGTTGGGGATTCCGTCCATTACCGTTCGAGAGCCTATGCAATATACAATACGAAAAGAACTGGTTAACGAGTGCGA AGAATCATTACGTTCCAATGGCCTCGTTTGGTATGGAGTAA
AA sequence Show only first row Show all	>Lus10003923 pacid=23166315 polypeptide=Lus10003923 locus=Lus10003923.g ID=Lus10003923.BGIv1.0 annot-version=v1.0 MACSWAPVTWATVKDTAFATRSLRNGSIFHRSLLMKTILMLKLVSVSDPFYNLNEDDGSVVVNSRFRFKVVRLVATRWNMEDEDGDIHNVDVEVFSSETG CWTTTYRVPLPGHIHCMLEILFGGVPMVPYNGKLYWIAEECCDFLVYDTNKNEFVMDRLDPPSEALRYGPYDGKIMRYEGLSLCEGSLWVAQNRGTQLRV FVLADGKWSIKHDVDMFDDMEWSWMKEEDEIFSTSSSREPKFLYMHPSDPMVGYMSTESMLLEFNFASGTVKVLIDIECASRARTMTSMCSLFIFLFGPP IAVASSCLSWGFRPLPFESLCNIQYEKNWLTSAKNHYVPMASFGME

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003923 [exp]	0	1
AT1G79890			RAD3-like DNA-binding helicase...		Lus10011447 [exp]	28.2	0.8259
AT2G44580			zinc ion binding (.1)		Lus10019511 [exp]	74.9	0.7971
AT3G54650		FBL17	RNI-like superfamily protein (...		Lus10018769 [exp]	89.6	0.7943
AT2G37960			unknown protein		Lus10035544 [exp]	101.5	0.7883

Compare expression of checked genes

Lus10003923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.