Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17260 726 / 0 AHA10 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1) AT2G07560 676 / 0 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT3G42640 670 / 0 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT4G30190 662 / 0 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT5G62670 662 / 0 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT2G18960 659 / 0 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT5G57350 657 / 0 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT2G24520 655 / 0 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT3G47950 653 / 0 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT1G80660 630 / 0 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037466 [exp] 882 / 0 AT1G17260 1387 / 0.0 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1) Lus10001631 [exp] 675 / 0 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10026946 [exp] 670 / 0 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10019593 [exp] 657 / 0 AT3G42640 1455 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Lus10042183 [exp] 652 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10003259 [exp] 652 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10024105 [exp] 650 / 0 AT1G80660 1657 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10028201 [exp] 637 / 0 AT3G60330 1422 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10004370 [exp] 631 / 0 AT3G60330 1529 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G161400 [exp] 766 / 0 AT1G17260 1441 / 0.0 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1) Potri.006G005900 [exp] 689 / 0 AT3G42640 1543 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.018G090300 [exp] 679 / 0 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.006G165900 [exp] 674 / 0 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.006G275000 [exp] 666 / 0 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.018G006000 [exp] 663 / 0 AT2G24520 1554 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.018G112400 [exp] 660 / 0 AT3G42640 1528 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.015G066000 [exp] 655 / 0 AT5G62670 1640 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.012G071600 [exp] 654 / 0 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.006G188600 [exp] 651 / 0 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase PF00690 [flax] [poplar] Cation_ATPase_N Cation transporter/ATPase, N-terminus
Representative CDS sequence Show only first row Show all	>Lus10003924 pacid=23166329 polypeptide=Lus10003924 locus=Lus10003924.g ID=Lus10003924.BGIv1.0 annot-version=v1.0 ATGGCGGAGGATATGTGTACGCCATTGTTGGATCGTGAGAAATTCCATCAAGCGTTGGTTGACATAGAAAGGTTGCCGTTAGAGGATGTTTTTGAGCAAC TAAGAACATCACAGGATGGACTTGCATCTGAAGTTGCTGAAGCTCGGTTAACGATTTTCGGGCCAAACAAACACGAAGAGAAGTCGGAGAACAAGTTACT GAAGTTCCTTGGCTTTATGTGGAATCCTTTGTCGTGGGTTATGGAAGCTACAGCAGTAATGGCGATCGTCCTTGCCTATGGTGGAGGTCAAGGCCCTGAC TGGCAGGACTTTGTGGGGATTGTTTGCCTACTGTTGATAAACTCAACTATAAGTTTCATCGAAGAAAGCAACTCTGGAGATGCTGCAGCTCCATTGATGG CTGGTTTGGCACTCAAAACAAAGGTTCTCAGAGACGGAGAGTGGCAAGAGAGGGATGCTGCTATTTTGGTGCCTGGAGATATTGTAAGTGTTAAGCTTGG GGACATAATCCCCGCAGATGCTCGAATGCTCGAAGGAGATCCGTTGAAAGTTGACCAGGCATGTTGTTTACATCCTGAGAACTCATCAGAATACAGCAGA TATTGTCAAGAACCGTTGCATCTCAATAACTCGAGGGAATCTCTTCCTGTGACCAAGAAAACAGGTGATGAAATTTTTTCTGGTTCTATATGCAAGCATG GAGAAGTTGAAGCTGTGGTCATAGCAACTGGAGTTCACTCCTTCTTGGGCAAAGCAGCTCACTTGGTTAACTCCACTGATGTTGTTGGCCCTTTTCAGAA GGTCCTTACTTCAATTGGAAACTTCTGCATTTGCTCTATAGCAGTGGGCATGGTTCTCGAAATCATAGTCATGTTTCCGGTACAGCATTGCGTATATAGG GAAGGAATCAACAATCTTCTTGTGCTCTTGATCGGAGGAATACCGATAGCTATGCCAACGGTGTTATCTGTCACGCTTGCAATCGGCTCTCATGGTTTAT CCAAACAGGGCGCAATCACGAAGAGGATGACAGAAATCGAGGAAATGGCAGCAATGGATGTGCTGTGTAGTGATAAAACAGGCACTCTTAAGTTGAATCG TCTTACAGTTGATGTAAACCTTATTGAGGCTGGAGAATCAGGATGCAATCGACGTAACACGCTTGATGATCCCAAGGAGGGGCGTGCCAACATCAGGGAA GTTCACTTTATGCCTTTCAATCCAGTGGATAGACGCACTGCCATCACATATGTAACCTCTGATGGCGAATGGTACCGAGCCAGCAAAGGAGCTCCTGAGC AGTATCAGATTTTAAATCTGTGCGAAGAAAAGAACGGCATTGTCAGAAGAGTGCATTCCGTCATTGACAGTTTCGCTGAAAGGGGCTTCCGGTCTCTTGG TGTAGCATATCAGGCACAATCACCCACCCTGCAGGAAATTCCTGACAGAACAAAAGAGAGTCCTGGCGGTCCTTGGAGTTTTTGTGGCTTGCTACCGTTG TTTGATCCTCCGAGACACGATAGTGCTGAGACTGTACGGAGAGCGCTTAGCCTTGGAGTTTGTGTCAAGATGATAACAGGTGATCAATTGGCAATTGCCG AGGAGACTGGGAGACGACTCGGCATGGGAACAAAGAAAGCGGACATCGAAATAGCTGTTGCAGGTTCTACAGATGCAGCCAGAAGTGCTGCTGATATAGT CTTAACTGAGGCTGGGTTGAGTGTGATTATCTGCGCGGTCTTGACTAGCAGGGCTATATTCCAAAGGATGAAAAATTATACGGTTGCCTTTTCAATATTA GCATTGATACGGAAGTATGATTTCCCACCTTTCATGGTTCTGATCATAGCAATACTAAATGATGGTAACTCTGCAACAGTTGTCCTTCCTTTTACTAGTT ACTAG
AA sequence Show only first row Show all	>Lus10003924 pacid=23166329 polypeptide=Lus10003924 locus=Lus10003924.g ID=Lus10003924.BGIv1.0 annot-version=v1.0 MAEDMCTPLLDREKFHQALVDIERLPLEDVFEQLRTSQDGLASEVAEARLTIFGPNKHEEKSENKLLKFLGFMWNPLSWVMEATAVMAIVLAYGGGQGPD WQDFVGIVCLLLINSTISFIEESNSGDAAAPLMAGLALKTKVLRDGEWQERDAAILVPGDIVSVKLGDIIPADARMLEGDPLKVDQACCLHPENSSEYSR YCQEPLHLNNSRESLPVTKKTGDEIFSGSICKHGEVEAVVIATGVHSFLGKAAHLVNSTDVVGPFQKVLTSIGNFCICSIAVGMVLEIIVMFPVQHCVYR EGINNLLVLLIGGIPIAMPTVLSVTLAIGSHGLSKQGAITKRMTEIEEMAAMDVLCSDKTGTLKLNRLTVDVNLIEAGESGCNRRNTLDDPKEGRANIRE VHFMPFNPVDRRTAITYVTSDGEWYRASKGAPEQYQILNLCEEKNGIVRRVHSVIDSFAERGFRSLGVAYQAQSPTLQEIPDRTKESPGGPWSFCGLLPL FDPPRHDSAETVRRALSLGVCVKMITGDQLAIAEETGRRLGMGTKKADIEIAVAGSTDAARSAADIVLTEAGLSVIICAVLTSRAIFQRMKNYTVAFSIL ALIRKYDFPPFMVLIIAILNDGNSATVVLPFTSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17260		AHA10	autoinhibited H\(+\)-ATPase is...		Lus10003924 [exp]	0	1
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10000843 [exp]	6.0	1.0000
AT5G12180		CPK17	calcium-dependent protein kina...		Lus10000889 [exp]	6.8	1.0000
AT1G18100		MFT, E12A11	MOTHER OF FT AND TFL1, PEBP (p...		Lus10002592 [exp]	8.0	1.0000
					Lus10022529 [exp]	8.9	1.0000
AT2G38500			2-oxoglutarate (2OG) and Fe(II...		Lus10006093 [exp]	9.8	1.0000
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10022417 [exp]	10.4	1.0000
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10023221 [exp]	12.0	1.0000
					Lus10001326 [exp]	13.1	1.0000
					Lus10003843 [exp]	13.8	1.0000
					Lus10022172 [exp]	14.4	1.0000

Compare expression of checked genes

Lus10003924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.