Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14360 545 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT5G42930 400 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1) AT1G56630 392 / 5e-132 alpha/beta-Hydrolases superfamily protein (.1) AT5G67050 365 / 7e-122 alpha/beta-Hydrolases superfamily protein (.1) AT1G45201 327 / 5e-107 AtTLL1 ARABIDOPSIS THALIANA TRIACYLGLYCEROL LIPASE-LIKE 1, triacylglycerol lipase-like 1 (.1.2) AT5G18630 71 / 2e-13 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT5G18640 71 / 3e-13 alpha/beta-Hydrolases superfamily protein (.1) AT2G31100 52 / 8e-07 alpha/beta-Hydrolases superfamily protein (.1) AT2G30550 52 / 9e-07 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G44810 49 / 7e-06 DAD1 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037465 [exp] 915 / 0 AT3G14360 584 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10005092 [exp] 364 / 2e-121 AT5G42930 490 / 2e-171 alpha/beta-Hydrolases superfamily protein (.1) Lus10005709 [exp] 356 / 9e-118 AT5G42930 517 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10009361 [exp] 351 / 1e-115 AT5G42930 478 / 4e-166 alpha/beta-Hydrolases superfamily protein (.1) Lus10042648 [exp] 348 / 2e-114 AT5G42930 514 / 2e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10033968 [exp] 59 / 3e-09 AT5G18640 463 / 5e-164 alpha/beta-Hydrolases superfamily protein (.1) Lus10023281 [exp] 50 / 3e-06 AT1G30370 342 / 2e-113 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10040158 [exp] 49 / 6e-06 AT4G16820 573 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10004364 [exp] 49 / 6e-06 AT4G16820 587 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G073800 [exp] 609 / 0 AT3G14360 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G161500 [exp] 602 / 0 AT3G14360 633 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G138800 [exp] 400 / 3e-135 AT5G42930 433 / 7e-149 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G044500 [exp] 392 / 3e-132 AT5G67050 502 / 7e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027800 [exp] 388 / 7e-131 AT5G42930 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027400 [exp] 372 / 3e-124 AT5G42930 529 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027500 [exp] 367 / 1e-122 AT5G42930 529 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G019500 [exp] 66 / 3e-11 AT5G18640 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G054600 [exp] 57 / 1e-08 AT4G18550 384 / 1e-131 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G047700 [exp] 52 / 9e-07 AT2G44810 491 / 9e-174 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10003925 pacid=23166322 polypeptide=Lus10003925 locus=Lus10003925.g ID=Lus10003925.BGIv1.0 annot-version=v1.0 ATGGCTGGAACAAGTAACAGTACCGGTAACGGTAATATAATTGGTACTAGTACCAGTCATATGAGGAGGAGATATGTGGTAGTAAGGCCAGAGAAAGGTA TACTCGCCTTGATTCGATATGCGTTGTGGGGAAAAGACGATGTCTTTTCGAGCAAGTTTCTGGAGATGAGTTCTCAACTGCAGATGAATGAGGATGAACA GGTAGATGCTGATCATGGGGAGTATAATACATCACCTTCGTGGGTGATTTTGGTGTCGATCCTTGTCCGGAAGATCATTTCGAGTTTAGGGAAGCCTATG GAGTACTGTGGGTATGTGTTTGAGTTCTTGCTCAATCTCTTGTCTCTGAATGGAAGCCTCTCTGGCTTGCTCCTCAACTTCCTTACCGGGAGGGTAGTGT TGCCAGAAAGAGGGAGTGAGACGTTTATAAGTACCATAGGACATTTGGATGGAAGAATAGACCTTTACAATGGCAGTAGTACTGCTGTTCATGATCAAGA TTTCACCTTTGAGTCGAACCCGGAACCATTGATGGATTTGTGTATCATGGCATCAAAATTGGCTTACGAAAATGCGAAAGTCGTCCATTCTCTCGTCTCC CACCACTGGAAGATGCACTTTGTGGGATTCTACAACTGCTGGAATGATTTCGAAAAGCAAATGTCGACCCAAGTGTACATACTGAGCGACAAGCCGAAAG ATGCAAACTTGATATTGATCAGCTTTAGGGGCACAGAGCCTTTCGATGCAGACGACTGGTGTACAGACTTCGACTACTCGTGGTACGAGGTCCCCAATTT CGGGAAGCTCCACATGGGATTCGTAGAAGCACTTGGTCTAGGCAACCGGAACGACATCTCCACTTTCGACTTGCACCTTCAGCAGACCGGACTACAACAG CAAGAGAATAAAAGGGAAGAGGGTGCATACTACCTGGTGAGGGAGAAGCTCAAGAGCTTGCTGGCATCGAACAAGGATGCGAAATTTGTTGTGACAGGAC ACAGCTTGGGGGGTGCACTTGCCATATTGTTCCCAACCGTGCTGGTGCTACACCGGGAGGATGAAACCATGAAGAGACTGCTGGGAGTGTACACTTTCGG CCAGCCTAGGATTGGGGACGCGCAGCTGGGGAAGTATATGGAAGCTCGTCTCGAGCATCCTTCGCCTAAGTACTTCAGGGTTGTCTACTGCAATGACCTT GTTCCTAGGCTGCCTTACGACGACAAGACTTTCTTGTACAAGCATTTCGGATGGTGCCTCTACTATGATAGCTCCTACATTGAGCAAGAAATGCAGGAGG AGCCGAACAAGAATTTCTTCAGCTTGAGGAACGCGGTGGCGGTACATCTGAATGCTGTGTGGGAGTTGTTGAGGAGTTTCGTGATTGGATACACCGAAGG TCCGGAATACAAGGAAGGGTGGTTGTCTATGTTGATGAGGATAATGGGAGTTGCACTGCCTGGCATTTCTGCTCACTCCCCTACCGATTATGTCAACTCC GTTCGACTTGGAAGACGACAGCGTCTTCTTGCTGCTTACTAG
AA sequence Show only first row Show all	>Lus10003925 pacid=23166322 polypeptide=Lus10003925 locus=Lus10003925.g ID=Lus10003925.BGIv1.0 annot-version=v1.0 MAGTSNSTGNGNIIGTSTSHMRRRYVVVRPEKGILALIRYALWGKDDVFSSKFLEMSSQLQMNEDEQVDADHGEYNTSPSWVILVSILVRKIISSLGKPM EYCGYVFEFLLNLLSLNGSLSGLLLNFLTGRVVLPERGSETFISTIGHLDGRIDLYNGSSTAVHDQDFTFESNPEPLMDLCIMASKLAYENAKVVHSLVS HHWKMHFVGFYNCWNDFEKQMSTQVYILSDKPKDANLILISFRGTEPFDADDWCTDFDYSWYEVPNFGKLHMGFVEALGLGNRNDISTFDLHLQQTGLQQ QENKREEGAYYLVREKLKSLLASNKDAKFVVTGHSLGGALAILFPTVLVLHREDETMKRLLGVYTFGQPRIGDAQLGKYMEARLEHPSPKYFRVVYCNDL VPRLPYDDKTFLYKHFGWCLYYDSSYIEQEMQEEPNKNFFSLRNAVAVHLNAVWELLRSFVIGYTEGPEYKEGWLSMLMRIMGVALPGISAHSPTDYVNS VRLGRRQRLLAAY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14360			alpha/beta-Hydrolases superfam...		Lus10003925 [exp]	0	1
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10024401 [exp]	2.0	0.8993
AT1G31550			GDSL-like Lipase/Acylhydrolase...		Lus10024085 [exp]	2.0	0.9052
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Lus10025002 [exp]	2.2	0.8976
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Lus10033905 [exp]	3.0	0.8994
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10023048 [exp]	4.0	0.9324
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Lus10016655 [exp]	4.7	0.8673
AT5G18980			ARM repeat superfamily protein...		Lus10001111 [exp]	7.0	0.8866
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10017466 [exp]	8.5	0.8961
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Lus10007613 [exp]	11.1	0.8383
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10010436 [exp]	12.2	0.8461

Compare expression of checked genes

Lus10003925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.