Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53730 824 / 0 SRF6 STRUBBELIG-receptor family 6 (.1.2) AT3G14350 797 / 0 SRF7 STRUBBELIG-receptor family 7 (.1.2.3) AT3G13065 550 / 0 SRF4 STRUBBELIG-receptor family 4 (.1) AT4G22130 437 / 1e-145 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT1G78980 410 / 1e-133 SRF5 STRUBBELIG-receptor family 5 (.1) AT4G03390 338 / 6e-105 SRF3 STRUBBELIG-receptor family 3 (.1) AT2G20850 335 / 8e-104 SRF1 STRUBBELIG-receptor family 1 (.1) AT1G11130 310 / 9e-95 SRF9, SCM, SUB STRUBBELIG-RECEPTOR FAMILY 9, SCRAMBLED, Leucine-rich repeat protein kinase family protein (.1) AT5G06820 270 / 5e-80 SRF2 STRUBBELIG-receptor family 2 (.1) AT3G20530 260 / 7e-80 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037464 [exp] 1129 / 0 AT1G53730 824 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10015549 [exp] 621 / 0 AT4G22130 972 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10033333 [exp] 433 / 3e-142 AT1G78980 803 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10034790 [exp] 420 / 1e-137 AT1G78980 768 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10020030 [exp] 416 / 9e-136 AT4G22130 947 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10035703 [exp] 377 / 5e-116 AT1G78980 746 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10039795 [exp] 342 / 1e-106 AT4G03390 892 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10031628 [exp] 340 / 1e-105 AT4G03390 870 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10033711 [exp] 336 / 2e-104 AT4G03390 825 / 0.0 STRUBBELIG-receptor family 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G161600 [exp] 926 / 0 AT1G53730 590 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.003G073700 [exp] 664 / 0 AT1G53730 575 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.007G002600 [exp] 643 / 0 AT1G78980 499 / 1e-168 STRUBBELIG-receptor family 5 (.1) Potri.014G001200 [exp] 454 / 2e-150 AT1G78980 817 / 0.0 STRUBBELIG-receptor family 5 (.1) Potri.011G010500 [exp] 446 / 5e-147 AT4G22130 916 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.004G005301 [exp] 445 / 7e-147 AT4G22130 906 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.019G103900 [exp] 352 / 4e-110 AT4G03390 801 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.013G144600 [exp] 340 / 9e-106 AT4G03390 783 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.004G037000 [exp] 335 / 2e-104 AT4G03390 645 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.011G045600 [exp] 332 / 3e-103 AT4G03390 617 / 0.0 STRUBBELIG-receptor family 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10003926 pacid=23166309 polypeptide=Lus10003926 locus=Lus10003926.g ID=Lus10003926.BGIv1.0 annot-version=v1.0 ATGGCGTTTGGTGGAGTAGTTTCCTGGACTGTACAGTTACTTAAAACAGCTAATTGTTTCTTGATTCTACATGCAGTTACGGTTCTACAGACCATGTTCA GTTCCTTAAACTCACCAGGACAGCTGACCGGGTGGAGCTCAAATGGAAACGATCCTTGTAGCCAGAATTGGAGGGGCGTGACATGTTCCGGCTCCCGAGT CACCGAGATAAAATTGCCGAGTTTAGGGCTCTCAGGGACAATGGGGTACAATCTTGACAGTTTAAAATCATTGAAGAACCTGGACATGAGTGGCAATAAC CTTGGAGGCAGTATACCGTACCAATTGCCACCGAACCTCGAGAGATTGAATCTTGCTAATAATCAGTTCACCGGAGAAATACCTTATTCGGTTTCTCAGA TGACCTCTCTGAAATACTTAAATCTTGCTCATAATCAGCTTCAGAATCAGCTGGGGGACATGTTTGGACAACTTTCTTCTCTGTCTACATTGGATATATC CTCCAACCAATTTTCTGGGAACCTGCCTGAAAGTTTTGGCACCCTTCCAAGTATAACAACTATGGACCTGCAAAACAACCAGTTCACCGGCACCATCAAT GTCCTTGCTAGCCTTCGCCTCGAAAATCTGAATATTGCAAACAATCATTTTACCGGCTGGATTCCGCCACAGTTGAGCAACGTCAACATTCAAAAGGATG GTAACAACTTTAATGCGGGGCCTGCACCCCCTCCGCCACCAGGAACGCCACCTGTCCGCAAAATCCCACGCAAGTCTGGTGGCAGCGATGGTGGTTCATC CAACAGTGGTGGTAGTTCCGGTGGCAGTGAAAGTAAAAAATCAGGAATAGGGGCTGGTGGTATAGCTGGAATCATCATATCCCTCTTGGTCGTTGGTGCA ATAGCTGCCTTCTTCATTATGAGAAAAAGATCCAAGAGATCGTCAACGGATATCGAAAAGCTTGATAATGAGCCCTTTGCTCCTCTTTCTGCTAATAACG TAGATGAAATGAAGTCCATCCACAGTGCTTCCTCAATCAACACGAAAACATTAGATATCCCGGCAGCGATGAGCCTGAAGCCCCCACCGATAGATCGTAC CAAGTCATTTGACGAGGATGACTCTTTCAAGAAGCCTGTTGTTGTCAAGAAACGTGTCGCAGCTCCTCCAGTTAGTGTCTCGGCATACTCAATAGCGGAT CTCCAGTTGGCGACTGGTAGCTTCAGTATGGATCATCTTCTTGGTGAGGGGTCTTTTGGGCGTGTCTATCGAGCTCATTTCGACGATGGCAAGGTGCTAG CAGTGAAGAAAATAGATGCAGCTGCTTTATCCAGTCGTGACATGTCCGAAGATTTCGTGGAGGTGGTTTCGAAGATCTCCGACTTGCATCACACCAATGT CACAGAGTTAGTGGGCTATTGTTCTGAGCATGGTCAACATCTTCTAGTCTATGAGTTCCACCGAAATGGATCACTACACGACTTCCTGCATCTATCAGAT GAATACAGCAAGCCGATGATATGGAATTCACGCGTCAAGATAGCACTTGGGACCGCACGTGCGTTAGAGTATCTTCATGAGATATGCTCGCCGTCTATAA TTCACAAAAACATCAAGTCAGCAAATATACTATTAGACGCTGAACTAAATCCTCACCTTTCGGACTCTGGCTTAGCAAGCTTCCTTCCAAATGCAGATCA GGCATTGAACCAGAATGCAGGTTCCGGATACAGTGCACCTGAGGTTGCTATGTCTGGTCAATATAGTCTCAAGAGTGACGTCTATAGCTTTGGGGTGGTG ATGCTGGAACTTCTTACCGGGCGTAAACCATTCGACAGTTCGAGGCCGAGAAATGAGCAATCTTTGGTACGTTGGGCGACACCTCAGCTTCACGACATTG ATGCACTATCCAAAATGGTTGATCCGGAGCTCAAAGGACTCTACCCCGTGAAGTCCCTCTCCCGTTTTGCTGATGTCGTCGCGCTTTGTGTTCAGCCCGA GCCTGAATTCAGGCCGCCAATGTCCGAAGTGGTGGAAGCTTTGGTTCGGTTAGTACAACGAGCCAACATGAGCAAGCGAACGACCGGGACCGAACAACTA ACAGCAGCCTCACAAGCCGAAAACTCAGATTCACAGGATTACATGGCTTAG
AA sequence Show only first row Show all	>Lus10003926 pacid=23166309 polypeptide=Lus10003926 locus=Lus10003926.g ID=Lus10003926.BGIv1.0 annot-version=v1.0 MAFGGVVSWTVQLLKTANCFLILHAVTVLQTMFSSLNSPGQLTGWSSNGNDPCSQNWRGVTCSGSRVTEIKLPSLGLSGTMGYNLDSLKSLKNLDMSGNN LGGSIPYQLPPNLERLNLANNQFTGEIPYSVSQMTSLKYLNLAHNQLQNQLGDMFGQLSSLSTLDISSNQFSGNLPESFGTLPSITTMDLQNNQFTGTIN VLASLRLENLNIANNHFTGWIPPQLSNVNIQKDGNNFNAGPAPPPPPGTPPVRKIPRKSGGSDGGSSNSGGSSGGSESKKSGIGAGGIAGIIISLLVVGA IAAFFIMRKRSKRSSTDIEKLDNEPFAPLSANNVDEMKSIHSASSINTKTLDIPAAMSLKPPPIDRTKSFDEDDSFKKPVVVKKRVAAPPVSVSAYSIAD LQLATGSFSMDHLLGEGSFGRVYRAHFDDGKVLAVKKIDAAALSSRDMSEDFVEVVSKISDLHHTNVTELVGYCSEHGQHLLVYEFHRNGSLHDFLHLSD EYSKPMIWNSRVKIALGTARALEYLHEICSPSIIHKNIKSANILLDAELNPHLSDSGLASFLPNADQALNQNAGSGYSAPEVAMSGQYSLKSDVYSFGVV MLELLTGRKPFDSSRPRNEQSLVRWATPQLHDIDALSKMVDPELKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRANMSKRTTGTEQL TAASQAENSDSQDYMA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53730		SRF6	STRUBBELIG-receptor family 6 (...		Lus10003926 [exp]	0	1
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10039124 [exp]	2.2	0.7658
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10035104 [exp]	3.7	0.8239
AT4G31080			Protein of unknown function (D...		Lus10009546 [exp]	4.0	0.8087
AT2G05810			ARM repeat superfamily protein...		Lus10029995 [exp]	6.7	0.7506
AT2G05810			ARM repeat superfamily protein...		Lus10029996 [exp]	8.8	0.7435
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10016584 [exp]	8.9	0.7541
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Lus10023305 [exp]	9.6	0.7760
AT3G55420			unknown protein		Lus10023413 [exp]	16.4	0.7500
AT4G37270		ATHMA1, HMA1	ARABIDOPSIS THALIANA HEAVY MET...		Lus10019313 [exp]	19.3	0.7717
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10021976 [exp]	19.4	0.7340

Compare expression of checked genes

Lus10003926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.