Plant FIBer expression Database

Lus10003927 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037463
[exp]
413 / 1e-142 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G139350
[exp]
356 / 8e-120 ND /
PFAM info
Representative CDS sequence
>Lus10003927 pacid=23166328 polypeptide=Lus10003927 locus=Lus10003927.g ID=Lus10003927.BGIv1.0 annot-version=v1.0
ATGGCTTGCAAGGGATTCCTTCTCCATGTTCTGTGTCTATCTTCCATGATGGTAACCATTTCAGCAATTTGGCTGAATCATGGCGCCGACATAACAAACT
CGACAGCCGGCGAAGTGCTCATCAACAGCTACACAGTCAACAAACTCAAACTCAAATCAACAGCTACACAGTCAGCAATAGCCAACGGCGTCGTATACTT
CCCGTCCTGGAATGGCTACATCTATGCTGTGACGGCGTCACACGGTAACTTGATATGGAAGCAACATCTGAACCAGCTAGCCGGACTTAACGGTACGAGA
GTCGTGGTCAACGTAACGGTGTCGAGATCGACTCCGACGATTGCGGAGGATCTGGTGGTGTTTGGAATCTATGGACCTGCTGTTGTGATTGCTCTGAATC
GGTGGAGTGGCAAGCTTGTTTGGAAGACCATGTTGGATCCCAGGCCTAGGGTGTTGATCACACAGTCTGGAACATATTTCAATGGTGCCAATAATTCGAG
TTGTTGGGAGGGCATTGTACGTGGGTGTTTCATCCCTGGAAGAAGGCCTACCAGCAGAACAATGCTGCACATTCCGCGGCAGGATGAGAAGCTCGAGGGA
CTCCTCCTGTGGAACACATACACGATCCCCGACAATGGCGGCCAAAGGGCAAGCTATTCAGGAGCTGCAGTTTGGGGCAGCAGCCCTGCAATTGATGTAG
TAAGAAAATTAGTTTACATTGCAACTGGAAACCTTTACACGGTCCCACCTGAAGTGGAAGCCTGTCAGGAAGCACAGAACAACCAGACTGGACCGAAACC
GAGCCAACCCGATCAATGCATCGCTCCCAACATTCATTACGACTCGATCCTGGCCCTCGAAATCGATACCGGCAGGATCAGATGGGCCAGGCAGCTTGGT
GGTTCTGATGTTTTCTATTTTGCCTGCTTGGTTCCGAATAATCCTGATTGTCCGCCGGGACCTAGCCCGGATGCGGACTTCGGAGAAGCGCCTATGCTGG
TCCGGAGTTTGGTCAATGGGGCGGTTTGA
AA sequence
>Lus10003927 pacid=23166328 polypeptide=Lus10003927 locus=Lus10003927.g ID=Lus10003927.BGIv1.0 annot-version=v1.0
MACKGFLLHVLCLSSMMVTISAIWLNHGADITNSTAGEVLINSYTVNKLKLKSTATQSAIANGVVYFPSWNGYIYAVTASHGNLIWKQHLNQLAGLNGTR
VVVNVTVSRSTPTIAEDLVVFGIYGPAVVIALNRWSGKLVWKTMLDPRPRVLITQSGTYFNGANNSSCWEGIVRGCFIPGRRPTSRTMLHIPRQDEKLEG
LLLWNTYTIPDNGGQRASYSGAAVWGSSPAIDVVRKLVYIATGNLYTVPPEVEACQEAQNNQTGPKPSQPDQCIAPNIHYDSILALEIDTGRIRWARQLG
GSDVFYFACLVPNNPDCPPGPSPDADFGEAPMLVRSLVNGAV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10003927
[exp]
0 1
Lus10038177
[exp]
3.5 0.7850
AT1G44100 AAP5 amino acid permease 5 (.1) Lus10042742
[exp]
5.1 0.8490
AT5G10050 NAD(P)-binding Rossmann-fold s... Lus10019683
[exp]
6.0 0.7250
AT3G03450 GRAS RGL2 RGA-like 2 (.1) Lus10031172
[exp]
6.8 0.7885
AT4G35890 winged-helix DNA-binding trans... Lus10025952
[exp]
8.1 0.6914
Lus10028940
[exp]
12.6 0.7566
AT2G21950 SKIP6 SKP1 interacting partner 6 (.1... Lus10030883
[exp]
16.1 0.6842
AT1G05020 ENTH/ANTH/VHS superfamily prot... Lus10035340
[exp]
16.6 0.7641
Lus10033191
[exp]
17.1 0.7452
AT4G16295 SPH1 S-protein homologue 1 (.1) Lus10018785
[exp]
17.5 0.7364

Lus10003927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.