Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53760 281 / 5e-95 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037462 [exp] 439 / 2e-157 AT1G53760 326 / 5e-113 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G161800 [exp] 280 / 8e-95 AT1G53760 275 / 1e-92 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10173 [flax] [poplar] Mit_KHE1 Mitochondrial K+-H+ exchange-related
Representative CDS sequence Show only first row Show all	>Lus10003928 pacid=23166330 polypeptide=Lus10003928 locus=Lus10003928.g ID=Lus10003928.BGIv1.0 annot-version=v1.0 ATGAGAGCAAGGCTGGTGGTGTTCCCGCTTCGTGGAAGGAACTGGTGCTTCTCCAGATCTCACGATCCTTCCCTTTCTTCCTCCTCATCCTCCTCCTCCA CCGTTCCTTCTACTGTTCGCGATCTCTGGCGGAGCGTCTCTTCCTCTAACTCCTCCGCTCCTCAGAATGCTCAGCTCGTCGTCGATTTCGTCGCCAACAA GATGAATCGGGCGTGGCTCGGTCTGGAGAAGTCTCCCGATGGCACTCTCAAGAAGAAGCTCCACGGGTTTGGCGTGAAGCTCTTGGCACGGGTTAGGCCG TCGGAGATTTTCTTGAAATCCATTTCCAGGGACGTCACTGATGTTGAAATTGTTTACCCTTTCAGTTTAAATGCGCGACTCGTACGAAGAAGGTTGCGAC ATATTGCAATTAGGGGAGTCGCCATCCATAAGAAATACTTCTATGGTTCAGTGACACTACTTCCTCTGACCTCTGCATTTACTGTTTTACCTCTGCCAAA TATCCCATTCTTTTGGGTCTTGTTTCGTACATATTCTCATTGGCGAGCCATGCAGGGAGGTGAGATTCTCCTAAAACTGGTGTCTGACGGCTCATGTTCT GACGATTCCGATGTTCAAAACGAGAAACAAAGCCAAATTGAGAAGACGAGCAATTCCAAAGACAAAGCTCGTTCTTCACCAGGTTCTCCATGGGTGTTAA AGCCATCAAGGGAGCTCGAGGAGATCGTGTGGCCGGAAGCAGAAGACGTTAGCGAAGCTGCCGTGTCGAGCATCTGCAAGAGTTATGGGCTAAACGTGAA AGATGTTCTCAAGTTTAAAGACAAGATGTAG
AA sequence Show only first row Show all	>Lus10003928 pacid=23166330 polypeptide=Lus10003928 locus=Lus10003928.g ID=Lus10003928.BGIv1.0 annot-version=v1.0 MRARLVVFPLRGRNWCFSRSHDPSLSSSSSSSSTVPSTVRDLWRSVSSSNSSAPQNAQLVVDFVANKMNRAWLGLEKSPDGTLKKKLHGFGVKLLARVRP SEIFLKSISRDVTDVEIVYPFSLNARLVRRRLRHIAIRGVAIHKKYFYGSVTLLPLTSAFTVLPLPNIPFFWVLFRTYSHWRAMQGGEILLKLVSDGSCS DDSDVQNEKQSQIEKTSNSKDKARSSPGSPWVLKPSRELEEIVWPEAEDVSEAAVSSICKSYGLNVKDVLKFKDKM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53760			unknown protein		Lus10003928 [exp]	0	1
AT5G47790	FHA		SMAD/FHA domain-containing pro...		Lus10003911 [exp]	11.2	0.8668
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006018 [exp]	11.9	0.8775
AT1G18030			Protein phosphatase 2C family ...		Lus10009642 [exp]	14.4	0.8760
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10037630 [exp]	24.9	0.8476
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10010700 [exp]	25.0	0.8408
AT5G14610			DEAD box RNA helicase family p...		Lus10032133 [exp]	39.9	0.8230
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10013402 [exp]	42.7	0.8074
AT2G26590		RPN13	regulatory particle non-ATPase...		Lus10021598 [exp]	45.3	0.8339
AT1G27900			RNA helicase family protein (....		Lus10015812 [exp]	47.3	0.8387
AT4G14110		FUS7, EMB143, C...	FUSCA 7, EMBRYO DEFECTIVE 143,...		Lus10036164 [exp]	57.0	0.8323

Compare expression of checked genes

Lus10003928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.