Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50420 651 / 0 O-fucosyltransferase family protein (.1) AT1G17270 643 / 0 O-fucosyltransferase family protein (.1) AT1G53770 612 / 0 O-fucosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037461 [exp] 917 / 0 AT1G17270 717 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G073500 [exp] 672 / 0 AT5G50420 694 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10003929 pacid=23166337 polypeptide=Lus10003929 locus=Lus10003929.g ID=Lus10003929.BGIv1.0 annot-version=v1.0 ATGGAGAGAGATTCATCCGACGAGGACGACGATCGAGAGAGCTTCCTAGAGCAGAACGACCGCAAGCACCCTCAGCCTCGCTCTCGAGAACCATCCACCT CTCCGCGTCCTTCCTCCTTCCACGTCGAGTCCGATCTCCGTTCCTACGGCAATGGATTCGGTCGCCGTTTGTCCAATCTCAGCCTTAAGAGGTACCTCTT CGCCTTCTTCCTCCCTCTCTTCCTTATCCTCCTCTACTTCTCCACCGACTTCCGTAGCCTCTTCTCTTCCAAATTCCCAGTCCTTAACCTCGATCCTCTT TCCGATCGGATGCGTGAGTCCGAGCTGCGAGCTCTCTACCTCCTCCGCCAGCAGCATCTTTCTCTCCTCTCCATCTGGAACCAGTCGTCCTCCTCCACCG CCGCGAATTTGAGCTCTACTGATGCTGCTCCGGCTCTCGATTCCATCCAATCTGCATTGCTGCCGTTGATTTCGCTCAACAAACAGATTGAGCAAGCTCT GCTGTCCCCTCATAACTCGTCCTCGGATTTGAATTCATCAAGTGGCGTTCCTGGTGTCTTCCCCAGCTGTCAGAGCCTCCACCGCCGGCTTCCTGATCGT AGAACGATTGACTGGAAGCCTCGGCCGGATAAGTTCCTGTTTGCTATTTGTTTGTCTGGACAGATGAGTAACCACTTGATTTGCTTGGAGAAGCACATGT TCTTTGCAGCTTTGCTCAACCGAGTTTTAGTTTTCCCGAGTTCCAAATTCGATTATCACTATAGTAGAGTCCTGGATATCGACCACATCAACACTTGCCT GGGAAGCAAAGTTGTGCTCACATTCGAAGAGTTTGTGGAAACGAGGAAGAATAAGCTGCGAATTGATAAGTTCGTATGCTACTTCTCGTCTCCAACGCCC TGTTACGTCGATGAGGACCATGTCAAGAAGTTGAAAGGCTTGGGGATCTCTGTAGGGAAGCTCGAGTCCCCTTGGAATGAGGATATCAAGAAGCCTAGTA AAAGGACTACGGCAGAAATTGTGGCTAAGTTCAAGTCTGATGATGATGTTATTGCTATTGGAGATGTGTTCTTTGCCAAAGTTGAGACTGAATGGCTGAT GCAGCCTGGTGGCCCTCTCGCTCACAAATGCAAGACTTTGATTGAACCGAGTAAGTTCATTATGCTCACGGCTCAGCGTTTCGTCCAGACTTTCTTGGGG AAGAACTTCGTCGCTCTCCATTTCCGCCGGCATGGATTTTTGAAGTTCTGCAATGCTAAACAGCCGAGTTGCTTTTACCCTGTTCCTCAAGCTGCCAGCT GCATAGCTCGTGTCAGTGAAAGAGCGAATGCACCAGTTATCTATCTTTCAACTGATGCAGCAGAAAGTGAGACCGACTTGCTGCAGTCACTGGTTGTTGT TAACGGAAAGAGCATACCATTAGTTAAGCGCCCTCCGCTTGATTCAGCTGAGAAGTGGGATGCTTTGCTGTATAGACATCACCTTGAAGATGATCCACAG GTGGAAGCTATGCTGGATAAGACCATATGTGCAATGTCCAGCGTGTTCATCGGATCCTCGGGCTCTACTTTCACAGACGATATCTTACGGCTCCGCAAGG ATTGGGAATCGTCTTCGTCATGTGACGAATACCTATGCCAGGGCGAGCTTCCCAACTTCATAGCAGAAGATGAATGA
AA sequence Show only first row Show all	>Lus10003929 pacid=23166337 polypeptide=Lus10003929 locus=Lus10003929.g ID=Lus10003929.BGIv1.0 annot-version=v1.0 MERDSSDEDDDRESFLEQNDRKHPQPRSREPSTSPRPSSFHVESDLRSYGNGFGRRLSNLSLKRYLFAFFLPLFLILLYFSTDFRSLFSSKFPVLNLDPL SDRMRESELRALYLLRQQHLSLLSIWNQSSSSTAANLSSTDAAPALDSIQSALLPLISLNKQIEQALLSPHNSSSDLNSSSGVPGVFPSCQSLHRRLPDR RTIDWKPRPDKFLFAICLSGQMSNHLICLEKHMFFAALLNRVLVFPSSKFDYHYSRVLDIDHINTCLGSKVVLTFEEFVETRKNKLRIDKFVCYFSSPTP CYVDEDHVKKLKGLGISVGKLESPWNEDIKKPSKRTTAEIVAKFKSDDDVIAIGDVFFAKVETEWLMQPGGPLAHKCKTLIEPSKFIMLTAQRFVQTFLG KNFVALHFRRHGFLKFCNAKQPSCFYPVPQAASCIARVSERANAPVIYLSTDAAESETDLLQSLVVVNGKSIPLVKRPPLDSAEKWDALLYRHHLEDDPQ VEAMLDKTICAMSSVFIGSSGSTFTDDILRLRKDWESSSSCDEYLCQGELPNFIAEDE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17270			O-fucosyltransferase family pr...		Lus10003929 [exp]	0	1
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10007584 [exp]	1.0	0.9725
AT2G01970			Endomembrane protein 70 protei...		Lus10042286 [exp]	1.4	0.9697
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10041601 [exp]	4.2	0.9688
AT1G09812			unknown protein		Lus10037361 [exp]	7.0	0.9423
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10011500 [exp]	7.5	0.9681
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10007497 [exp]	7.5	0.9655
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Lus10034515 [exp]	7.9	0.9643
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10031850 [exp]	10.5	0.9641
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10017340 [exp]	10.6	0.9653
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10015069 [exp]	11.2	0.9115

Compare expression of checked genes

Lus10003929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.