Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53800 339 / 7e-110 unknown protein AT1G53250 97 / 1e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037460 [exp] 910 / 0 AT1G53800 387 / 3e-126 unknown protein Lus10028136 [exp] 87 / 4e-18 AT1G53250 139 / 1e-37 unknown protein Lus10042840 [exp] 84 / 5e-17 AT1G53250 144 / 1e-38 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G073400 [exp] 419 / 9e-141 AT1G53800 426 / 3e-143 unknown protein Potri.001G161900 [exp] 414 / 1e-138 AT1G53800 433 / 8e-146 unknown protein Potri.001G393700 [exp] 88 / 1e-18 AT1G53250 124 / 5e-32 unknown protein Potri.011G112300 [exp] 87 / 3e-18 AT1G53250 139 / 2e-37 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003930 pacid=23166336 polypeptide=Lus10003930 locus=Lus10003930.g ID=Lus10003930.BGIv1.0 annot-version=v1.0 ATGAATCTAATGTTCTGGACAGATATTCCTACTGCTCAGACATCCTTGCGAAATCAACTGCATCCGAGGGCCCGGATACTCCCTCGTTGTCAGGCCTGTC GAGCCTTCTCAACCCCGTTCACCCGAGCTGATGACACCGGACTTCACTCTGCCTGGAAGTCTTTACTCCCTCCTGTAAGTCGAAGGCGTCACTTTTTCAT CAGGGCAGTGGCAACTGTTGGAACTGACACACTGAGTGAAGTGAGACATGGAGATGAGGCGGCTAAATGTGACCCGCTCCCGGATTTTACTTCAGCTCCT TCTACGTCTCACGATGATAGCGAAGAGTCCGATGAAGAAGTGGACGAGGGTGAGAAGCTGAGACGAATGAGGATCTCGAAAGCGAATTCAGGGAAAGTTC CGTGGAACAAGGGCAGGAAGCATAGTCCTGAAACCATTCAACGGATCAAGGAGAGAACAAGGCTTGCCATGCAGAATCCTAAGATTAAAATGAAGCTCCA AAACCTTGGGCATGCGCAGACCACAGAGACGAGAGTGAAGATTAGTATTGCAGTGCGGGAAGGATGGGAAAAGCGCCGTGAGAAGCTGATGTTGCAGGAA TATTGTTACTTTGATTGGCAGAACTTGATAGCAGAAGCTTCACGGATTGGCTTTGTTGACGAGGAAGAGTTGGAATGGAACTCGTATAGTATCTTACGTA AAAAGCTTCAAATTGAATGGGTGGAGAGTGTTGAAATCCGGAAAACAATGCCTAGGCCAAAGGGCAACAAGAGAGCTCCAAAAACCCCCGAGCAAAGAAG AAAAATTGCAGAAGCCATTGCTGCCAAATGGGCAGATCCTTCATATCGCGAACGAGTCTGCTCTGGTCTTGCTAGACACCATGGAATTACAGAAGGTACC GAGAGAAAGCCAAGGCGAATTAGCAGCGGACCATCCACCAAGAGGAATGTCGAGAAAAGGAAAGCCATTGGGTTGAGCAATTCCTATGGAAGTGATGCCA CGAGCCCTGCTCAGGTTCCACGAGCGCGGAAGATTGCAGCACCGTCGTACAAGGATCCCATGGCGCGTTCCAAATTGAGGATGATAATGAAAATCAGAAA ACAAAGGGCTTCCGCGGAAACTCAGAAAACTGAAGCCATTGAACGGGCAAGGTTATTCATAGCTGAAGCCGAGAAGGCAGCTAAATTTCTCGAGGCTGCA GCAGGAAATAGCCCCATTGCACAAGCTTCTCTGCTGGAGACCAGAAAGCTCATAGATGAAGCAATTGAATCGATCAAATCCATCAACGGAGGGGATATCG AAATCGGAACAACTGAACCAGCCAACGAGGAGGAGACGACAAACGAGGAGGAGACGACAAACGAGGAGGCAGTAAAAGAAGTTAACGGCACCAAAACCGA CGCAATTCGTGCAGAAGAGGACGACCCAATCAACTTCACTAACTTGGCCATCCGCGACAAGTTCGATTTGACGAGTCTTGTAGAGAAGAAACCAGACGAC TGCAACGGAGAACTGAACGGGTATCTCAAATGCGGACACAGTACTATTGAACCAAATGGTTCTGAAGGTGAGCATACAAACGGGGAAAAGCCGTGTGAGA CAGGGACTGAACCGAGAAAGAGATGGATTCGAGGAAGGCTCGTTGATGTCGAGTCGGAAGGAAATCGGGATTAG
AA sequence Show only first row Show all	>Lus10003930 pacid=23166336 polypeptide=Lus10003930 locus=Lus10003930.g ID=Lus10003930.BGIv1.0 annot-version=v1.0 MNLMFWTDIPTAQTSLRNQLHPRARILPRCQACRAFSTPFTRADDTGLHSAWKSLLPPVSRRRHFFIRAVATVGTDTLSEVRHGDEAAKCDPLPDFTSAP STSHDDSEESDEEVDEGEKLRRMRISKANSGKVPWNKGRKHSPETIQRIKERTRLAMQNPKIKMKLQNLGHAQTTETRVKISIAVREGWEKRREKLMLQE YCYFDWQNLIAEASRIGFVDEEELEWNSYSILRKKLQIEWVESVEIRKTMPRPKGNKRAPKTPEQRRKIAEAIAAKWADPSYRERVCSGLARHHGITEGT ERKPRRISSGPSTKRNVEKRKAIGLSNSYGSDATSPAQVPRARKIAAPSYKDPMARSKLRMIMKIRKQRASAETQKTEAIERARLFIAEAEKAAKFLEAA AGNSPIAQASLLETRKLIDEAIESIKSINGGDIEIGTTEPANEEETTNEEETTNEEAVKEVNGTKTDAIRAEEDDPINFTNLAIRDKFDLTSLVEKKPDD CNGELNGYLKCGHSTIEPNGSEGEHTNGEKPCETGTEPRKRWIRGRLVDVESEGNRD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53800			unknown protein		Lus10003930 [exp]	0	1
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Lus10027610 [exp]	4.0	0.9139
AT1G20830		MCD1	multiple chloroplast division ...		Lus10013209 [exp]	7.7	0.8480
AT4G02210			unknown protein		Lus10013421 [exp]	8.4	0.8600
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Lus10033127 [exp]	11.0	0.9013
AT5G03800		EMB166, EMB175,...	embryo defective 1899, EMBRYO ...		Lus10035587 [exp]	12.0	0.8845
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10000449 [exp]	14.1	0.8854
AT4G21770			Pseudouridine synthase family ...		Lus10007657 [exp]	14.7	0.9003
AT4G26370			antitermination NusB domain-co...		Lus10013400 [exp]	16.7	0.8970
AT1G30520		AAE14	acyl-activating enzyme 14 (.1)		Lus10036027 [exp]	19.9	0.8918
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Lus10014623 [exp]	20.1	0.8882

Compare expression of checked genes

Lus10003930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.