Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67070 99 / 1e-27 RALFL34 ralf-like 34 (.1) AT3G05490 52 / 2e-09 RALFL22 ralf-like 22 (.1) AT2G33775 49 / 3e-08 RALFL19 ralf-like 19 (.1) AT4G15800 49 / 4e-08 RALFL33 ralf-like 33 (.1) AT3G16570 48 / 1e-07 ATRALF23, RALFL23 ARABIDOPSIS RAPID ALKALINIZATION FACTOR 23, rapid alkalinization factor 23 (.1) AT1G02900 47 / 3e-07 RALF1, RALFL1, ATRALF1 RALF-LIKE 1, rapid alkalinization factor 1 (.1) AT1G28270 44 / 1e-06 RALFL4 ralf-like 4 (.1) AT3G25170 38 / 0.0003 RALFL26 ralf-like 26 (.1) AT4G13950 37 / 0.001 RALFL31 ralf-like 31 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037460 [exp] 121 / 9e-33 AT1G53800 387 / 3e-126 unknown protein Lus10001132 [exp] 82 / 7e-21 AT5G67070 100 / 4e-28 ralf-like 34 (.1) Lus10000502 [exp] 56 / 1e-10 AT4G15800 134 / 1e-41 ralf-like 33 (.1) Lus10020647 [exp] 55 / 2e-10 AT4G15800 119 / 5e-36 ralf-like 33 (.1) Lus10029893 [exp] 54 / 6e-10 AT4G15800 116 / 8e-35 ralf-like 33 (.1) Lus10037512 [exp] 52 / 2e-09 AT4G15800 131 / 9e-41 ralf-like 33 (.1) Lus10015172 [exp] 51 / 7e-09 AT4G15800 107 / 2e-31 ralf-like 33 (.1) Lus10005541 [exp] 49 / 3e-08 AT1G28270 69 / 3e-16 ralf-like 4 (.1) Lus10015316 [exp] 47 / 2e-07 AT1G28270 100 / 7e-29 ralf-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G139100 [exp] 106 / 2e-30 AT5G67070 118 / 4e-35 ralf-like 34 (.1) Potri.007G044700 [exp] 100 / 3e-28 AT5G67070 119 / 1e-35 ralf-like 34 (.1) Potri.014G026900 [exp] 86 / 1e-22 AT5G67070 94 / 6e-26 ralf-like 34 (.1) Potri.004G044900 [exp] 56 / 5e-11 AT1G28270 103 / 4e-30 ralf-like 4 (.1) Potri.004G045000 [exp] 56 / 6e-11 AT1G28270 103 / 4e-30 ralf-like 4 (.1) Potri.013G017400 [exp] 53 / 9e-10 AT4G15800 123 / 1e-37 ralf-like 33 (.1) Potri.014G131800 [exp] 52 / 2e-09 AT4G15800 123 / 1e-37 ralf-like 33 (.1) Potri.005G025800 [exp] 52 / 3e-09 AT4G15800 138 / 1e-43 ralf-like 33 (.1) Potri.008G208200 [exp] 50 / 1e-08 AT4G15800 132 / 2e-41 ralf-like 33 (.1) Potri.017G059500 [exp] 40 / 0.0001 AT4G13950 96 / 2e-26 ralf-like 31 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05498 [flax] [poplar] RALF Rapid ALkalinization Factor (RALF)
Representative CDS sequence Show only first row Show all	>Lus10003931 pacid=23166327 polypeptide=Lus10003931 locus=Lus10003931.g ID=Lus10003931.BGIv1.0 annot-version=v1.0 ATGGCGACTCCCAGAGTTCTCCTCACTCCGCTGCTCCTCCTTGTCTTGCTGTCTGTCTTAAGCGCCTTATCTTCTTCTTCCGCCGCCGAAAGTACGGCGA TGAGCAGCGGCGGCGGACTGGAGTTCCCGATCGCGATGTCGATGTACGGCGGAGGCGGCGGTGGAGAGCTTGAGGATGAGTTGGAGGAAGCGGAGGAAGA CGGAGGAGGAGATGGAGGAAAGAGAAGGGAGCTGTACTGGAGGAGATGGCCGCAGCAGCATTACTACATCTCGTACGGAGCTCTGTCGGCGAACAGAGTC CCCTGCCCGCCCAGATCTGGAAGGTCTTACTACACCAATAACTGCTTCGCGACTCGCACTCCGGTCAACCCTTACACCCGTGGCTGCTCCAGAATCACCC GCTGCCGTTATTAG
AA sequence Show only first row Show all	>Lus10003931 pacid=23166327 polypeptide=Lus10003931 locus=Lus10003931.g ID=Lus10003931.BGIv1.0 annot-version=v1.0 MATPRVLLTPLLLLVLLSVLSALSSSSAAESTAMSSGGGLEFPIAMSMYGGGGGGELEDELEEAEEDGGGDGGKRRELYWRRWPQQHYYISYGALSANRV PCPPRSGRSYYTNNCFATRTPVNPYTRGCSRITRCRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67070		RALFL34	ralf-like 34 (.1)		Lus10003931 [exp]	0	1
AT3G27750		EMB3123	EMBRYO DEFECTIVE 3123, unknown...		Lus10025805 [exp]	2.2	0.8302
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10004807 [exp]	5.1	0.8066
AT3G26935			DHHC-type zinc finger family p...		Lus10035177 [exp]	8.7	0.7902
AT1G09815		POLD4	polymerase delta 4 (.1)		Lus10024978 [exp]	8.9	0.7885
AT1G65295			unknown protein		Lus10026997 [exp]	12.2	0.7624
AT3G18050			unknown protein		Lus10027253 [exp]	13.0	0.7714
AT3G26935			DHHC-type zinc finger family p...		Lus10032009 [exp]	13.9	0.7601
AT3G57400			unknown protein		Lus10018074 [exp]	16.6	0.7616
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10013344 [exp]	17.3	0.7582
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10034753 [exp]	17.7	0.7638

Compare expression of checked genes

Lus10003931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.