Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50430 365 / 3e-129 UBC33 ubiquitin-conjugating enzyme 33 (.1.2.3) AT1G17280 363 / 1e-128 UBC34 ubiquitin-conjugating enzyme 34 (.1.2) AT3G17000 125 / 2e-34 UBC32 ubiquitin-conjugating enzyme 32 (.1) AT5G56150 77 / 1e-17 UBC30 ubiquitin-conjugating enzyme 30 (.1.2) AT3G08690 76 / 6e-17 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT2G02760 73 / 5e-16 ATUBC2 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) AT5G53300 73 / 5e-16 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT1G64230 72 / 9e-16 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT1G14400 72 / 9e-16 ATUBC1, UBC1 UBIQUITIN CONJUGATING ENZYME 1, ubiquitin carrier protein 1 (.1.2) AT4G27960 72 / 9e-16 UBC9 ubiquitin conjugating enzyme 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037459 [exp] 461 / 8e-164 AT5G50430 374 / 2e-129 ubiquitin-conjugating enzyme 33 (.1.2.3) Lus10016898 [exp] 129 / 1e-35 AT3G17000 397 / 6e-140 ubiquitin-conjugating enzyme 32 (.1) Lus10037759 [exp] 126 / 1e-34 AT3G17000 397 / 1e-139 ubiquitin-conjugating enzyme 32 (.1) Lus10028700 [exp] 74 / 2e-16 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10009422 [exp] 74 / 2e-16 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10037203 [exp] 74 / 3e-16 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10036727 [exp] 74 / 3e-16 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10027846 [exp] 74 / 3e-16 AT1G64230 289 / 3e-102 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10022726 [exp] 73 / 5e-16 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G162200 [exp] 372 / 5e-132 AT1G17280 371 / 9e-132 ubiquitin-conjugating enzyme 34 (.1.2) Potri.003G073100 [exp] 162 / 3e-51 AT1G17280 172 / 3e-55 ubiquitin-conjugating enzyme 34 (.1.2) Potri.010G143900 [exp] 127 / 3e-35 AT3G17000 386 / 1e-135 ubiquitin-conjugating enzyme 32 (.1) Potri.008G106300 [exp] 127 / 4e-35 AT3G17000 380 / 7e-133 ubiquitin-conjugating enzyme 32 (.1) Potri.019G083800 [exp] 77 / 1e-17 AT5G56150 280 / 1e-98 ubiquitin-conjugating enzyme 30 (.1.2) Potri.001G471200 [exp] 77 / 2e-17 AT1G64230 292 / 2e-103 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.011G168200 [exp] 75 / 1e-16 AT1G64230 295 / 1e-104 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.019G131400 [exp] 74 / 3e-16 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.016G138900 [exp] 74 / 3e-16 AT1G64230 304 / 3e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.003G136200 [exp] 74 / 3e-16 AT1G64230 304 / 4e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10003932 pacid=23166311 polypeptide=Lus10003932 locus=Lus10003932.g ID=Lus10003932.BGIv1.0 annot-version=v1.0 ATGGCGGAAAAAGCTTGCGTGAAGCGACTCCAGAAGGAATACAGGGCGCTGTGTAAAGAACCAGTCTCTAATGTGGTGGCTCGTCCTTCCCCGAGTAACA TTCTTGAATGGCATTACGTACTGGAGGGAAGTGAAGGTACGCCTTTTGCAGGGGGATATTACTACGGGAAGATCAAGTTCCCTCCTGAGTATCCATATAA ACCTCCTGGAATTACTATGATTACTCCGAACGGACGATTCATGACTCAGAAGAAAATCTGCCTGTCAATGAGTGACTTTCATCCAGAAAGTTGGAATCCT ATGTGGTCCGTGTCAAGCATTCTCACAGGGCTGCTTTCTTTCATGATGGATAACAGCCCAACAACAGGAAGTGTTAATAGCACCATTGAAGAGAAACAAC GTCTTGCAGCAGCCTCTCTTGCTTTCAATTGCAAGAACTCAGTATTTCGTAAGTTGTTTCCCGAGTACGTCGAAAAGTACAACCTAGTGCAGCAGCAGCA GTCTGGCCAGCTGGTTTCAGATTCTCCACACGAGATCACACATGATGAGAACTCTCGGCCCAAGCCAGAAAAGGCCGACGGCCTTCTGGAAGAGGCAGGA AAGGTAGTCGATCCAGCTGCGAAGGATGCAGGGAGGAACAGAAAGCAGGCGTTTCCGACTTGGGTAATGTTGTTGCTCGTCTCGATCTTTGGGATTGTGA TGGCTTTGCCTCTGCTTCAGCTTTCACAATCCTAG
AA sequence Show only first row Show all	>Lus10003932 pacid=23166311 polypeptide=Lus10003932 locus=Lus10003932.g ID=Lus10003932.BGIv1.0 annot-version=v1.0 MAEKACVKRLQKEYRALCKEPVSNVVARPSPSNILEWHYVLEGSEGTPFAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQKKICLSMSDFHPESWNP MWSVSSILTGLLSFMMDNSPTTGSVNSTIEEKQRLAAASLAFNCKNSVFRKLFPEYVEKYNLVQQQQSGQLVSDSPHEITHDENSRPKPEKADGLLEEAG KVVDPAAKDAGRNRKQAFPTWVMLLLVSIFGIVMALPLLQLSQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50430		UBC33	ubiquitin-conjugating enzyme 3...		Lus10003932 [exp]	0	1
AT1G04555			unknown protein		Lus10023715 [exp]	1.4	0.9274
AT5G01800			saposin B domain-containing pr...		Lus10022750 [exp]	2.0	0.9127
AT2G36900		ATMEMB11, MEMB1...	membrin 11 (.1.2)		Lus10005690 [exp]	2.8	0.8997
AT5G22950		VPS24.1	SNF7 family protein (.1)		Lus10016143 [exp]	3.0	0.9022
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10025639 [exp]	3.5	0.8951
AT1G29800			RING/FYVE/PHD-type zinc finger...		Lus10029271 [exp]	3.7	0.8914
AT4G32940		GAMMAVPE, GAMMA...	gamma vacuolar processing enzy...		Lus10024446 [exp]	3.9	0.8993
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10018057 [exp]	5.5	0.8870
AT3G02460			Ypt/Rab-GAP domain of gyp1p su...		Lus10003047 [exp]	5.8	0.8769
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10035299 [exp]	6.5	0.8789

Compare expression of checked genes

Lus10003932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.