Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14310 717 / 0 ATPME3 pectin methylesterase 3 (.1) AT1G53830 711 / 0 ATPME2 pectin methylesterase 2 (.1) AT5G53370 435 / 2e-146 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT3G49220 435 / 3e-146 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G43270 424 / 5e-143 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02320 414 / 3e-139 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 414 / 2e-138 ATPMEPCRA methylesterase PCR A (.1) AT4G02300 407 / 4e-136 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05620 406 / 1e-135 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 395 / 8e-132 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039314 [exp] 711 / 0 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10037458 [exp] 655 / 0 AT3G14310 491 / 2e-170 pectin methylesterase 3 (.1) Lus10013344 [exp] 635 / 0 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10008203 [exp] 434 / 9e-147 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018103 [exp] 432 / 9e-145 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 428 / 3e-144 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 421 / 8e-143 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 410 / 3e-137 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10009110 [exp] 402 / 1e-134 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G072800 [exp] 777 / 0 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.001G162400 [exp] 775 / 0 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1) Potri.018G051400 [exp] 682 / 0 AT3G14310 708 / 0.0 pectin methylesterase 3 (.1) Potri.001G162600 [exp] 582 / 0 AT3G14310 551 / 0.0 pectin methylesterase 3 (.1) Potri.001G162500 [exp] 575 / 0 AT3G14310 541 / 0.0 pectin methylesterase 3 (.1) Potri.003G002800 [exp] 575 / 0 AT3G14310 592 / 0.0 pectin methylesterase 3 (.1) Potri.003G002650 [exp] 571 / 0 AT3G14310 598 / 0.0 pectin methylesterase 3 (.1) Potri.006G256700 [exp] 552 / 0 AT3G14310 587 / 0.0 pectin methylesterase 3 (.1) Potri.006G256600 [exp] 528 / 0 AT3G14310 548 / 0.0 pectin methylesterase 3 (.1) Potri.002G202500 [exp] 508 / 2e-175 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10003933 pacid=23166319 polypeptide=Lus10003933 locus=Lus10003933.g ID=Lus10003933.BGIv1.0 annot-version=v1.0 ATGACCGTTTTACCGCTCCTCCTTGTCGCCACCTTCACGGCGGAGACGGCGCCATCCGCCGCCGCCTCCCCAACCAATTACTACAACCAATACCACCTCC CACCCACTTCAACAATCCCAACCACCGCCGCCACCCCTCACCACGCCCTCCTCCGTTCCGCCTGCAGCAACACCCTCTACTCGGACCTCTGCTTCTCCGC CGTCGCCACCATTCCCGGCGCCGCCGAAGCCCTCACCACCCAGAAGGACGTCATCGAGGCCTCCATCAACCTCACCTGCTCTGCCGTCCAGCGCAACTTC TTCACCGTCGAGAGCCTCATCAAGGATCCCCGCCGACGCCGGCGGAAGAATAAGAGGGAGATGACGGCGCTCCACGACTGCCTGGAGACGATCGACGAGA CTTTGGACGAGCTCCACGTGGCGCTCCGGGATCTGAACGAGTACCCGAACAAGAAGCCGCTGACGCAGCACGCCGCCGATTTAAAGACTTTGCTCAGCGC CGCCATGACGAATCAGGAGACTTGCCTCGACGGGTTCTCGCACGACGGCGCGGACAAGCGCGTGAGGGAGGCGCTGCTTCAGGGGCAGACGCACGTGGAG CGCATGTGCAGTAACTCGCTAGCGATGATTATTAACATGACGGAATCCGACATTCGAGAGGACCGGCGGCGGCGGCTCAGCCAGATCCGTGGCAGGAAGG TGGCTGAGTTTAGGAAGGAGTCATCGGCGGAGGAGAAGTGGCCGGAGTGGGTGTCGGCGGGGGACAGGAGGCTGCTACAGGCGACGGAGGAGGAGGTGAA GCCGAACGTGGTGGTGGCGGCGGACGGGAGCGGAGACTTCGCCACGGTGGAGGAGGCGGTGGCGGCAGCGCCGAACAAGAGCAAGGAGAGGTTCATAATA AAGATCAAAGCGGGAGTTTACAGAGAAAATGTGGAGGTAACGAAGTCGAAGACCAATCTAATGTTCTTGGGCGACGGAAGAGCAACCACCATCATTACCG CTAGTAGAAACGTCGCCGATGGGTTCACCACCTTCAAATCCGCCACCGTCGCAGTGGTGGGCCAGGGATTCCTAGCGCGAGACATAACATTCCAAAACAC GGCGGGCCCACAAAAGCACCAAGCCGTGGCACTTCGAGTTGGTGCTGACCTGGCAGCTTTCTACAACTGCGACATCCTGGCCTACCAAGACACCCTCTAC GTCCACTCCAACCGTCAGTTCTTCATCAACTGCCTCATCGCCGGCACCGTCGACTTCATCTTTGGCAACGCCGCCGTCGTCATCCAGGACTGCGACATTC ACGCCCGCCTCCCTGGTCCGGGCCAGAAGAACATGATCACCGCCCAGGGCAGGAAAGATCCCAACCAAAACACAGGTATCGTCATCCAAAAGTCCAGGAT TGGTGCCACGTCGGACCTGCTGTCCGCACCGAATAATAGTTTCCCGACGTACTTGGGGAGGCCGTGGAAGGAGTTCTCGAGGACGGTAATCATGCAATCG TCGATAAGCGACGTGGTCCACTCGTCTGGATGGCACGAGTGGAACGGCGAATTCGCGCTTGCCACGTTGGTTTACAGGGAGTTTTCGAACAGTGGGCCCG GGTCGAACACCTCGGAAAGGGTTAAGTGGGAAGGATATAAGGTGATGAGTAATGAGACGGAGGCGGCGGCATTCACGCCGGATAATTTCATCGCCGGTGG TTCCTGGCTCCGACCTACTAACTTCCCTTTCTCCCTTGGTTTGTGA
AA sequence Show only first row Show all	>Lus10003933 pacid=23166319 polypeptide=Lus10003933 locus=Lus10003933.g ID=Lus10003933.BGIv1.0 annot-version=v1.0 MTVLPLLLVATFTAETAPSAAASPTNYYNQYHLPPTSTIPTTAATPHHALLRSACSNTLYSDLCFSAVATIPGAAEALTTQKDVIEASINLTCSAVQRNF FTVESLIKDPRRRRRKNKREMTALHDCLETIDETLDELHVALRDLNEYPNKKPLTQHAADLKTLLSAAMTNQETCLDGFSHDGADKRVREALLQGQTHVE RMCSNSLAMIINMTESDIREDRRRRLSQIRGRKVAEFRKESSAEEKWPEWVSAGDRRLLQATEEEVKPNVVVAADGSGDFATVEEAVAAAPNKSKERFII KIKAGVYRENVEVTKSKTNLMFLGDGRATTIITASRNVADGFTTFKSATVAVVGQGFLARDITFQNTAGPQKHQAVALRVGADLAAFYNCDILAYQDTLY VHSNRQFFINCLIAGTVDFIFGNAAVVIQDCDIHARLPGPGQKNMITAQGRKDPNQNTGIVIQKSRIGATSDLLSAPNNSFPTYLGRPWKEFSRTVIMQS SISDVVHSSGWHEWNGEFALATLVYREFSNSGPGSNTSERVKWEGYKVMSNETEAAAFTPDNFIAGGSWLRPTNFPFSLGL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10003933 [exp]	0	1
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10007319 [exp]	2.2	0.7656
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10026610 [exp]	6.5	0.7614
AT3G15630			unknown protein		Lus10017768 [exp]	6.7	0.7456
AT5G57480			P-loop containing nucleoside t...		Lus10006968 [exp]	25.5	0.6829
AT2G41350		AtAUG1, EMB2819	EMBRYO DEFECTIVE 2819, augmin ...		Lus10043401 [exp]	27.0	0.7157
AT5G57480			P-loop containing nucleoside t...		Lus10006967 [exp]	36.2	0.6790
AT2G27410	B3		Domain of unknown function (DU...		Lus10030996 [exp]	36.2	0.5970
AT1G21080			DNAJ heat shock N-terminal dom...		Lus10030713 [exp]	44.7	0.7028
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10041010 [exp]	54.0	0.6672
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10027628 [exp]	62.9	0.6952

Compare expression of checked genes

Lus10003933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.