Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53840 657 / 0 ATPME1 pectin methylesterase 1 (.1) AT3G14300 553 / 0 ATPMEPCRC, ATPME26 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) AT5G04960 465 / 2e-157 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G10710 449 / 3e-151 RHS12 root hair specific 12 (.1) AT5G53370 382 / 6e-125 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT1G53830 377 / 4e-123 ATPME2 pectin methylesterase 2 (.1) AT3G14310 376 / 1e-122 ATPME3 pectin methylesterase 3 (.1) AT3G05610 377 / 6e-122 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G49220 372 / 7e-121 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 360 / 3e-117 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037456 [exp] 680 / 0 AT1G53840 461 / 3e-160 pectin methylesterase 1 (.1) Lus10037457 [exp] 495 / 4e-173 AT1G53840 234 / 1e-72 pectin methylesterase 1 (.1) Lus10033399 [exp] 425 / 1e-141 AT3G10710 606 / 0.0 root hair specific 12 (.1) Lus10034859 [exp] 397 / 9e-131 AT3G10710 561 / 0.0 root hair specific 12 (.1) Lus10013344 [exp] 381 / 7e-125 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10039314 [exp] 367 / 2e-119 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10018335 [exp] 368 / 3e-119 AT3G05610 446 / 3e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 365 / 9e-119 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018103 [exp] 365 / 8e-118 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G072700 [exp] 772 / 0 AT1G53840 723 / 0.0 pectin methylesterase 1 (.1) Potri.001G162700 [exp] 659 / 0 AT1G53840 659 / 0.0 pectin methylesterase 1 (.1) Potri.006G134800 [exp] 528 / 0 AT1G53840 505 / 1e-173 pectin methylesterase 1 (.1) Potri.010G247600 [exp] 459 / 4e-155 AT3G10710 609 / 0.0 root hair specific 12 (.1) Potri.008G011200 [exp] 446 / 7e-150 AT3G10710 621 / 0.0 root hair specific 12 (.1) Potri.001G162400 [exp] 396 / 1e-130 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1) Potri.003G072800 [exp] 393 / 3e-129 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.012G014500 [exp] 390 / 9e-128 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G013700 [exp] 388 / 7e-127 AT3G49220 805 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G149700 [exp] 384 / 6e-126 AT3G59010 565 / 0.0 pectin methylesterase 61 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10003934 pacid=23166321 polypeptide=Lus10003934 locus=Lus10003934.g ID=Lus10003934.BGIv1.0 annot-version=v1.0 ATGGATACGATGAAGTCATTCAAAGGCTACGGCAAGGTGGACGAAGCAGAGGAGCTCGCCTTCCGCCAAAAGACCCGCCGCCGTTACATAATCTTCGGGG TCTCCTCTGTCATCCTCCTCGCAGTCATAATCGCCGCCGTCGCCGGAGTCGTAGTCCACAACCGCAAATCCGGCAATGGCTCCTCATCCGACGCCGACAA GCTCCCTCCTACTGAATCACCCGCAGCATCGCTCAAGGCCGTCTGCAGTGTCACTGAGTACCCTGCCTCCTGCTACTCGAGCATCTTGGAGCTCGAGGCT GGCTCCAACTCCTCCGATCCGGAGCTGCTCTTCAAGCTCTCGCTGCAAGTCGCCATGAACGAGCTCTCCAAGCTCAAGGACCTCCCGTCCAAGATCCAGA TCCCGGAGAACGACACCGCGATTCAGCTGGCAGTGGAGGTTTGCTCCACTGTGTTCGATGACAGTGTAGATCGGCTCAACGACTCGATTGCTGCCATGGC AGCGGATGCTGAAGGAGGAGGTGGTCAGAATAAGCAGATGCTGTCTAAGGAAAGAATCGACGATCTGAAGACGTGGCTAAGCACGGCGGTTACAGATCTG GACACTTGTTTGGATGCGATGCAGCTGAACGAGACGGAGCACTCCGGATCGGAGGCGATTTTACAGCAATTAACAACGGCGATGGAGAATTCGACGGAAT TCGTTAGCAACAGTCTTGCAATCGTGAACAAGGTCATGAGCCTGCTCTCCGATTTCAACATCCCGATCCACAAGAGAAGGAAGCTACTGACGGATTCTCC ATCAGATTTGAAATTAGGTTTTCCGCGGTGGCTGAGCGGCGGGGATAGGAGGCTGCTGCAGGAGATCGGCCACGGCAGTGGAGCGATTAAACCGAATGTG ACGGTGGCGAAGGATGGGACGGGGAATTTCACGACGATTAGGGAGGCTGTGCCGGGGATACCGAAGAAGAGTCAGTGGAGGTATGTTATTTACATTAAGG AAGGAGTGTATAAGGAGAATGTGATTCTGGAGAAGCAACTGTGGAACGTGGTGGTCTACGGCGACGGCAAGGACAAGACCGTCATCTCCGGCAGTCTGAA TTTCATCGACGGTGTTATTTACATTAAGGAAGGAGTGTATAAGGAGAATGTGATTCTGGAGAAGCACTTGTGGAATGTGGTGGTCTACGGCGACGGCAAG GACAAGACGGTGATCTCCGGCAGTCTGAATTTCATCGACGGGACGCCTACTTTCTCTACTCCTACTTTCGCCGCGGTGGGGAAAGGGTTCATGGCAAGAG ACATCAAGTTCATAAACACGGCAGGACCCTCGAAGCATCAAGCGGTCGCATTCCGGTCAGGAGCTGACATGTCAGTCTACTACAAATGCGCCTTCGATGC CTACCAAGACACCCTCTACCCGCACTCGAACCGCCAGTTCTACAAAGACTGCGACATCACGGGCACCATCGACTTCATATTCGGCAACGCGGCCGTAGTC TTCCAAGGCTGCAACATCATGCCGAGGCAGCCACTCCCCAACCAATTCAACACCATCACAGCACAGGGTAAAAAAGACCCGAACCAGAACACAGGGATAT CAATCCAGAAATGCTCGTTCTTTCCCCTGGAGAAAAATCTAACGGCTAGGACTTACTTGGGCCGGCCGTGGAAGGATTTCTCGACGACGGTGATCATGCA GTCGTCGATTGATGGGTTTGTGAGCCCGTTGGGATGGCTATCGTGGGTTTCGGGAGTGGACCCGCCGAACACTATTTTTTACGCGGAGTATCAGAATACT GGGCCTGGGTCTGGGTTGGCGGGAAGGGTGAAGTGGGCTGGGTATAGGCCTGGGCTTACGAGTGATGAAGCTGGTAAGTTTACGGTTGAGTCGTTTCTGC ATGGGAGTACGTGGCTGCCTGCCACGTCGGTTGCTTTCGATTCCACGTTGTGA
AA sequence Show only first row Show all	>Lus10003934 pacid=23166321 polypeptide=Lus10003934 locus=Lus10003934.g ID=Lus10003934.BGIv1.0 annot-version=v1.0 MDTMKSFKGYGKVDEAEELAFRQKTRRRYIIFGVSSVILLAVIIAAVAGVVVHNRKSGNGSSSDADKLPPTESPAASLKAVCSVTEYPASCYSSILELEA GSNSSDPELLFKLSLQVAMNELSKLKDLPSKIQIPENDTAIQLAVEVCSTVFDDSVDRLNDSIAAMAADAEGGGGQNKQMLSKERIDDLKTWLSTAVTDL DTCLDAMQLNETEHSGSEAILQQLTTAMENSTEFVSNSLAIVNKVMSLLSDFNIPIHKRRKLLTDSPSDLKLGFPRWLSGGDRRLLQEIGHGSGAIKPNV TVAKDGTGNFTTIREAVPGIPKKSQWRYVIYIKEGVYKENVILEKQLWNVVVYGDGKDKTVISGSLNFIDGVIYIKEGVYKENVILEKHLWNVVVYGDGK DKTVISGSLNFIDGTPTFSTPTFAAVGKGFMARDIKFINTAGPSKHQAVAFRSGADMSVYYKCAFDAYQDTLYPHSNRQFYKDCDITGTIDFIFGNAAVV FQGCNIMPRQPLPNQFNTITAQGKKDPNQNTGISIQKCSFFPLEKNLTARTYLGRPWKDFSTTVIMQSSIDGFVSPLGWLSWVSGVDPPNTIFYAEYQNT GPGSGLAGRVKWAGYRPGLTSDEAGKFTVESFLHGSTWLPATSVAFDSTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14300		ATPMEPCRC, ATPM...	A. THALIANA PECTIN METHYLESTER...		Lus10003934 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10011089 [exp]	2.8	0.8889
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Lus10028597 [exp]	2.8	0.8915
AT4G27100			Ypt/Rab-GAP domain of gyp1p su...		Lus10011159 [exp]	4.8	0.8485
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10007538 [exp]	6.0	0.8735
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001368 [exp]	10.2	0.8781
AT1G80230			Rubredoxin-like superfamily pr...		Lus10023135 [exp]	14.0	0.7910
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10000808 [exp]	15.7	0.8699
AT5G19760			Mitochondrial substrate carrie...		Lus10007883 [exp]	15.7	0.8739
AT3G24480			Leucine-rich repeat (LRR) fami...		Lus10017727 [exp]	16.4	0.8766
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10035273 [exp]	17.0	0.8650

Compare expression of checked genes

Lus10003934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.