Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72330 842 / 0 ALAAT2 alanine aminotransferase 2 (.1.2.3) AT1G17290 829 / 0 ALAAT1 alanine aminotransferas (.1) AT1G23310 486 / 9e-169 GGAT1, AOAT1, GGT1 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 1, ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1, glutamate:glyoxylate aminotransferase (.1.2) AT1G70580 479 / 1e-165 GGT2, AOAT2 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) AT5G36160 88 / 2e-18 Tyrosine transaminase family protein (.1) AT4G11280 86 / 1e-17 ATACS6, ACS6 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) AT4G26200 84 / 5e-17 ACS7, ATACS7 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) AT4G28410 83 / 1e-16 Tyrosine transaminase family protein (.1) AT5G51690 82 / 1e-16 ACS12 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) AT2G20610 81 / 7e-16 RTY1, RTY, HLS3, ALF1, SUR1 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037455 [exp] 975 / 0 AT1G72330 893 / 0.0 alanine aminotransferase 2 (.1.2.3) Lus10006203 [exp] 465 / 2e-160 AT1G70580 868 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Lus10036850 [exp] 466 / 3e-160 AT1G70580 872 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Lus10026692 [exp] 461 / 1e-158 AT1G70580 878 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Lus10004623 [exp] 449 / 2e-153 AT1G70580 865 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Lus10017703 [exp] 100 / 2e-22 AT2G20610 486 / 1e-170 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10033659 [exp] 97 / 2e-21 AT5G36160 481 / 3e-169 Tyrosine transaminase family protein (.1) Lus10032654 [exp] 92 / 1e-19 AT5G53970 423 / 2e-147 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10017934 [exp] 89 / 9e-19 AT5G53970 619 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G072600 [exp] 839 / 0 AT1G72330 838 / 0.0 alanine aminotransferase 2 (.1.2.3) Potri.001G162800 [exp] 833 / 0 AT1G17290 828 / 0.0 alanine aminotransferas (.1) Potri.008G187400 [exp] 466 / 8e-161 AT1G70580 895 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Potri.010G045100 [exp] 461 / 7e-159 AT1G70580 895 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Potri.017G014100 [exp] 93 / 4e-20 AT5G53970 528 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014000 [exp] 90 / 4e-19 AT5G53970 520 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013900 [exp] 89 / 9e-19 AT5G53970 521 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G137950 [exp] 87 / 4e-18 AT5G53970 504 / 2e-178 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014200 [exp] 87 / 4e-18 AT5G36160 540 / 0.0 Tyrosine transaminase family protein (.1) Potri.018G067000 [exp] 86 / 9e-18 AT4G26200 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10003935 pacid=23166314 polypeptide=Lus10003935 locus=Lus10003935.g ID=Lus10003935.BGIv1.0 annot-version=v1.0 ATGCGGAGATCAGTAACCCCAAGGTCCAAATCCACTCTCCTCCACATCCTCAATCAACCTCACATTTCGCCCCACCACCGCTTAATCGGTCCTCCTTCTA CTTCTTCTTCTTCTTCTTCCTCCCCGCTCCTCCTCTTCCTCCGCAGCTTCTCATCGTCCTCCCCATCTCCTCCCGAGATGCCGAACCCCGTCTCCCTCAA CACCATCAACCCCAAGGTGTTGCAATGCGAATATGCTGTCCGTGGTGAGATTGTCAACATTGCTCAGAGCTTGCAAGAGGAGCTGAAGACGAACCCTGGC TCTCTTCCTTTTGATGAGATAATCTATTGCAACATCGGGAACCCTCAGTCTCTTGGTCAGCTTCCGATCACCTACTTCCGAGAGGTTCTTGCACTGTGCG ACCTTCCTACGCTTTTGGACAAAGCTGAAACACAGGGCCTATTCAGTGCTGATTCCATAGAGCGAGCATGGCAGATTCTTGACCAAATTCCTGGGAGGGC AACTGGAGCATACAGCCATAGTCAGGGTATCAAAGGATTACGTGATACAATTGCTGCTGGCATTGAAGCTCGTGATGGCTTTCCTTGTAATCCGAATGAT ATCTTTCTCACCGATGGTGCAAGTCCAGCTGTACACATGATGATGCAACTACTGATAAGCTCCGAAAAAGATGGGATCTTGTGCCCCATTCCTCAATACC CTTTGTATTCTGCTTCGATTGCTCTTCACGGTGGTACTCTGGTTCCTTACTATCTTGACGAAGAAACTGGATGGGGTTTGGAAATTGCTGAACTCAAGAA GCAATTGGAGGAGGCTAGGTCAAAGGGAATCTCTGTTAGGGCTCTGGTTGTGATAAATCCAGGCAACCCAACTGGGCAGGTACTTGCTGAGCAAAACCAG CGGGACATTGTAGACTTCTGCAAGAAAGAGGGCCTTGTTCTTTTAGCAGATGAGGTTTATCAGGAGAATGTCTATGTTCCTGAGAAGAAGTTCCACTCAT TTAAGAAAATTTCCCGGGCTATGGGCTGTAGCGATAAGGATTTGCCTCTTGTATCTTTCCAGTCAGTATCAAAAGGGTATCATGGTGAATGTGGAAAGAG AGGAGGTTACATGGAGGTCACTGGGTTTACTCCTGAAGTTAGAGAGCAAATATACAAAGTGGCCTCTGTGAATCTTTGCTCTAACATTTCTGGCCAAATC CTTGCGAGTCTCGTCATGAGCCCACCTAAGGTTGGAGATGAATCTTATGATTCATATTCTGCTGAAAAAGACGGGATCCTTTCGTCACTGGCAAGGCGTG CCAAGACACTCGAGGAAGCACTCAACAATTTAGAAGGCGTAACCTGCAACAGAGCAGAGGGAGCTATGTATCTTTTCCCACGAATCAGGTTGCCCGCAAA GGCAATCAAAGCTGCAGAAGCTGCAAAAACAGCTCCCGACTTGTTCTACTGCCGTAATCTGCTCAAAGCGACCGGAGTGGTCGTGGTCCCTGGTTCCGGA TTCCGCCAAGTTCCGGGAACGTGGCACTTCAGGTGCACCATTCTGCCCCAGGAGGACAAGATACCGGCGATTGTGTCACGACTGACAGAGTTCCACAAGA GCTTCATGAACGAGTACCGTGATTAA
AA sequence Show only first row Show all	>Lus10003935 pacid=23166314 polypeptide=Lus10003935 locus=Lus10003935.g ID=Lus10003935.BGIv1.0 annot-version=v1.0 MRRSVTPRSKSTLLHILNQPHISPHHRLIGPPSTSSSSSSSPLLLFLRSFSSSSPSPPEMPNPVSLNTINPKVLQCEYAVRGEIVNIAQSLQEELKTNPG SLPFDEIIYCNIGNPQSLGQLPITYFREVLALCDLPTLLDKAETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPCNPND IFLTDGASPAVHMMMQLLISSEKDGILCPIPQYPLYSASIALHGGTLVPYYLDEETGWGLEIAELKKQLEEARSKGISVRALVVINPGNPTGQVLAEQNQ RDIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKISRAMGCSDKDLPLVSFQSVSKGYHGECGKRGGYMEVTGFTPEVREQIYKVASVNLCSNISGQI LASLVMSPPKVGDESYDSYSAEKDGILSSLARRAKTLEEALNNLEGVTCNRAEGAMYLFPRIRLPAKAIKAAEAAKTAPDLFYCRNLLKATGVVVVPGSG FRQVPGTWHFRCTILPQEDKIPAIVSRLTEFHKSFMNEYRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72330		ALAAT2	alanine aminotransferase 2 (.1...		Lus10003935 [exp]	0	1
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021051 [exp]	1.0	0.9737
AT3G62120			Class II aaRS and biotin synth...		Lus10016281 [exp]	1.4	0.9683
AT2G40800			unknown protein		Lus10030504 [exp]	2.6	0.9625
AT5G43500		ATARP9	actin-related protein 9 (.1.2)		Lus10022198 [exp]	3.7	0.9545
AT5G08680			ATP synthase alpha/beta family...		Lus10034631 [exp]	4.2	0.9670
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Lus10000872 [exp]	4.7	0.9587
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Lus10004146 [exp]	5.5	0.9646
AT2G36460			Aldolase superfamily protein (...		Lus10023870 [exp]	6.5	0.9634
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10010786 [exp]	7.3	0.9591
AT5G55410			Bifunctional inhibitor/lipid-t...		Lus10032575 [exp]	7.5	0.9658

Compare expression of checked genes

Lus10003935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.