Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14290 461 / 6e-161 PAE2 20S proteasome alpha subunit E2 (.1) AT1G53850 461 / 6e-161 PAE1, ATPAE1 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) AT1G53860 206 / 2e-59 Remorin family protein (.1) AT3G22110 178 / 2e-51 PAC1 20S proteasome alpha subunit C1 (.1) AT1G16470 159 / 2e-44 PAB1 proteasome subunit PAB1 (.1.2) AT1G79210 158 / 3e-44 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT5G66140 156 / 2e-43 PAD2 proteasome alpha subunit D2 (.1) AT3G51260 155 / 4e-43 PAD1 20S proteasome alpha subunit PAD1 (.1.2) AT5G42790 148 / 3e-40 ARS5, ATPSM30, PAF1 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) AT1G47250 147 / 6e-40 PAF2 20S proteasome alpha subunit F2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037454 [exp] 895 / 0 AT1G53850 464 / 8e-163 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10042145 [exp] 178 / 2e-51 AT3G22110 474 / 3e-172 20S proteasome alpha subunit C1 (.1) Lus10004235 [exp] 165 / 2e-47 AT3G22110 375 / 2e-134 20S proteasome alpha subunit C1 (.1) Lus10041890 [exp] 158 / 4e-44 AT5G66140 442 / 9e-160 proteasome alpha subunit D2 (.1) Lus10028437 [exp] 152 / 6e-42 AT5G66140 417 / 8e-150 proteasome alpha subunit D2 (.1) Lus10017135 [exp] 151 / 1e-41 AT1G16470 454 / 1e-164 proteasome subunit PAB1 (.1.2) Lus10036210 [exp] 149 / 8e-41 AT1G16470 450 / 3e-163 proteasome subunit PAB1 (.1.2) Lus10007396 [exp] 145 / 5e-39 AT5G42790 442 / 8e-159 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Lus10024269 [exp] 144 / 1e-38 AT5G42790 440 / 4e-158 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G162900 [exp] 464 / 2e-162 AT3G14290 471 / 4e-171 20S proteasome alpha subunit E2 (.1) Potri.003G072500 [exp] 458 / 7e-160 AT3G14290 464 / 1e-168 20S proteasome alpha subunit E2 (.1) Potri.001G163000 [exp] 294 / 2e-92 AT1G53860 333 / 6e-110 Remorin family protein (.1) Potri.006G008800 [exp] 177 / 4e-51 AT3G22110 452 / 1e-163 20S proteasome alpha subunit C1 (.1) Potri.016G015400 [exp] 174 / 7e-50 AT3G22110 445 / 1e-160 20S proteasome alpha subunit C1 (.1) Potri.012G123550 [exp] 155 / 4e-43 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.015G122400 [exp] 155 / 4e-43 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.009G133800 [exp] 151 / 1e-41 AT5G66140 409 / 2e-146 proteasome alpha subunit D2 (.1) Potri.004G174200 [exp] 150 / 2e-41 AT3G51260 406 / 2e-145 20S proteasome alpha subunit PAD1 (.1.2) Potri.002G033900 [exp] 148 / 4e-40 AT5G42790 449 / 1e-161 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF00227 [flax] [poplar] Proteasome Proteasome subunit CL0052 [flax] [poplar] NTN PF10584 [flax] [poplar] Proteasome_A_N Proteasome subunit A N-terminal signature CL0052 [flax] [poplar] PF03763 [flax] [poplar] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10003936 pacid=23166334 polypeptide=Lus10003936 locus=Lus10003936.g ID=Lus10003936.BGIv1.0 annot-version=v1.0 ATGGGTGGGAGTGGGAACTTCAATGGAGGAGCCGGAACCATGAAACCCTCATTTGCATTTGAACCACCAGACCCACTCTGCAATCTCAACCTCAAGGAGA CCTCCGATTTCGTCAAGTCCTTTCCTTTCTCCGCCGCCGGTGGCGGCGGTGAACCCCTTCCTCGGAAGAAGAGCTTCCCTTCCAAATGGGACGACGCCCA AAAATGGCTTGTAGCTTCCCCTGCCCATCCCCTTCACCACCACCGTCCAACGCCGCCTCGCAAACAACTCATCTCTACCGCCGCCTCCACCGCCTCCTCT CCAGTGGACCTCCACCACAACGATTCGCTTCCCAAAGATAAGTTCACAGATGATGCTGAGACAGTCTTCCCCAAGTTGAAGAACTCGGAGCCATGTAGTA AAGAAGGGTTCTTGTTCAGGAACATGAGAGATTACGATGTCAAAACGACGATGAATGATGGTGGAAACGACAGTACTATGATGAAGCACAAAGATGTAGG GACGGAGATGACTCCACTGGGGAGTTCAACTACTTCCAGATGTCACACTCCTTTCAGCATCTGCTCGCCTGCCCGACACAACACGCCTGCAAATCGGTCG GGGCCATTGGTGGCGACTGTATCGAACTCGGGAAGCAGCAGCCACGATAGTGACATATCGCAGTTGCGGGACTGCCATTTGGTTAAGCTCCAGTTTGACC CCGTTGGGTCAAACTGGAGCTCGAAGGAGGATGAGGAGGAAGAGGTGTCGAAGAGCTTGAGGCATTTCGAGATGGGGAGGAGCAGCAGCGTCTCGGACGG GAGGGCTGCCGCTGCTCTGGTTTGGGAGGAAGAGGAGAAGACTAAATGGTGCCTCAGATACGAGAGAGAAGAAGCAAGGATTCAAGCATGGGTGAACCTG GAGAGCGCAAAAGCTGAAGCTCAGTCAAGAAAGCTAGAGGTAAAGATACAAAAGATGAGATCAAGCTTGGAGGAAAAGTTGATGAAGAGGATGATGATCG TTCGAAAGAAAGCAGAGGAACAGAGAGCTGCGGCTCTACAGCAGCATACCCAACACATCCACATCACCACCCAAAATGCCCGCAAGATGATCACAACCAC CACCACCGCCACTAACCACCCTAATCCTCCTCCGGCGGCCGGTGGCGCCGTCACCGCCGCCAATCGTAGTAATGGGAAATTTATTTACGCTTCTACCACT ACTACTTCATGTGGCTGCCTCCCCTGTAATAACCTCATTAAGACCGAGTATGACAGAGGAGTCAACACTTTCTCTCCTGAAGGCCGACTCTTCCAGGTCG AATATGCTATCGAAGCCATCAAGCTTGGGTCTACTGCAATTGGATTGAAGACGAAGGAAGGAGTTGTGCTTGCAGTTGAGAAGCGTATCACTTCACCACT CCTGGAGCCAAGTAGTGTTGAGAAAGTGATGGAGATAGATCAGCATATAGGGTGTGCTATGAGTGGACTAATTGCAGATGCTCGTACTCTTGTTGAGCAT GCTCGTGTTGAGACTCAGAGTCATAGATTTTCATATGGCGAGCCAATGACTGTGGAGTCTACAACACAGGCTCTATGTGATCTGGCCCTAAGATTTGGTG AAGGCGATGAAGAGTCTATGTCTCGACCCTTTGGGGTGTCGCTTCTCATTGCTGGTCATGATGAGAATGGTCCTAGCTTGTACTATACGGATCCATCTGG CACATTTTGGCAATGCAACGCCAAGGCTATTGGTTCAGGTTCTGAAGGTGCAGATAGCTCTCTGCAAGAGCAATACAACAAGGACCTTACTCTTCTGGAA GCTGAAACCATAGCACTTTCGATTCTAAAGCAAGTTATGGAGGAAAAGGTAACACCGAACAATGTCGACATAGCGAAAGTGTCTCCGACTTACCATTTGT ACACTCCAGCAGAGGTGGAAGCTGTCATCGGTCGCCTGTGA
AA sequence Show only first row Show all	>Lus10003936 pacid=23166334 polypeptide=Lus10003936 locus=Lus10003936.g ID=Lus10003936.BGIv1.0 annot-version=v1.0 MGGSGNFNGGAGTMKPSFAFEPPDPLCNLNLKETSDFVKSFPFSAAGGGGEPLPRKKSFPSKWDDAQKWLVASPAHPLHHHRPTPPRKQLISTAASTASS PVDLHHNDSLPKDKFTDDAETVFPKLKNSEPCSKEGFLFRNMRDYDVKTTMNDGGNDSTMMKHKDVGTEMTPLGSSTTSRCHTPFSICSPARHNTPANRS GPLVATVSNSGSSSHDSDISQLRDCHLVKLQFDPVGSNWSSKEDEEEEVSKSLRHFEMGRSSSVSDGRAAAALVWEEEEKTKWCLRYEREEARIQAWVNL ESAKAEAQSRKLEVKIQKMRSSLEEKLMKRMMIVRKKAEEQRAAALQQHTQHIHITTQNARKMITTTTTATNHPNPPPAAGGAVTAANRSNGKFIYASTT TTSCGCLPCNNLIKTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKVMEIDQHIGCAMSGLIADARTLVEH ARVETQSHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLLE AETIALSILKQVMEEKVTPNNVDIAKVSPTYHLYTPAEVEAVIGRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53850		PAE1, ATPAE1	ARABIDOPSIS 20S PROTEASOME ALP...		Lus10003936 [exp]	0	1
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10009017 [exp]	1.7	0.8531
AT3G27430		PBB1	N-terminal nucleophile aminohy...		Lus10032102 [exp]	2.0	0.8552
AT3G23390			Zinc-binding ribosomal protein...		Lus10040983 [exp]	5.0	0.8578
AT2G19730			Ribosomal L28e protein family ...		Lus10006869 [exp]	5.3	0.8385
AT2G31410			unknown protein		Lus10031995 [exp]	7.4	0.8192
AT5G27470			seryl-tRNA synthetase / serine...		Lus10017409 [exp]	9.0	0.8253
AT5G65860			ankyrin repeat family protein ...		Lus10032850 [exp]	9.5	0.8361
AT5G27470			seryl-tRNA synthetase / serine...		Lus10010211 [exp]	9.8	0.8124
AT3G23390			Zinc-binding ribosomal protein...		Lus10013436 [exp]	12.8	0.8365
AT4G18905			Transducin/WD40 repeat-like su...		Lus10015348 [exp]	17.0	0.7931

Compare expression of checked genes

Lus10003936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.