Plant FIBer expression Database

Lus10003937 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G14280 56 / 1e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037453
[exp]
241 / 3e-83 AT3G14280 51 / 7e-09 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G163100
[exp]
78 / 5e-19 AT3G14280 69 / 2e-15 unknown protein
Potri.003G072400
[exp]
75 / 8e-18 AT3G14280 83 / 3e-21 unknown protein
PFAM info
Representative CDS sequence
>Lus10003937 pacid=23166316 polypeptide=Lus10003937 locus=Lus10003937.g ID=Lus10003937.BGIv1.0 annot-version=v1.0
ATGACTGCAGTACCAGTCAAAACATGCTTCCTAATGATGATGCAAACCTCTGGTTCTTCGGTTCCGAACCGGCGTAGAGTCAGAGGATGCTGCAGCAGCA
AAGCACCTAAACCTGCGAGGATCATGATCAGATGTTCATCTTATCCTTCATCCAGCTTCGAGAACCCGGTTGAGGGGATAGTTTGTTACACAGATGCAAG
AACAGGGGAGGTTGTTTGCGAAGGTTACGACGAAGGGCCTCGTTTCGAGCACCACCACCACCGGCGGCAGCAGCAGCAGATTCCTCTGGCTGCTGCTGCA
TACAGACATCATTCAACAAGGGATGGGGAGATAATGATGAACCTGCTTCAGCAGAGGCTGCTGCAGATTGTTAATGGCAATGATCAGTTTGAAGGTACTA
CAGCAGCAGCAGCAGCAGTAATGCCCTTGCAAGAAGACCTTTCAAACTTTAAATCATAA
AA sequence
>Lus10003937 pacid=23166316 polypeptide=Lus10003937 locus=Lus10003937.g ID=Lus10003937.BGIv1.0 annot-version=v1.0
MTAVPVKTCFLMMMQTSGSSVPNRRRVRGCCSSKAPKPARIMIRCSSYPSSSFENPVEGIVCYTDARTGEVVCEGYDEGPRFEHHHHRRQQQQIPLAAAA
YRHHSTRDGEIMMNLLQQRLLQIVNGNDQFEGTTAAAAAVMPLQEDLSNFKS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G14280 unknown protein Lus10003937
[exp]
0 1
AT1G45249 bZIP AtABF2, ATAREB1... ABSCISIC ACID RESPONSIVE ELEME... Lus10006489
[exp]
3.2 0.9011
AT1G21890 nodulin MtN21 /EamA-like trans... Lus10021201
[exp]
3.7 0.9083
AT4G38960 CO B-box type zinc finger family ... Lus10035472
[exp]
4.0 0.8875
AT5G60660 PIP2F, PIP2;4 plasma membrane intrinsic prot... Lus10015083
[exp]
4.2 0.8932
AT2G37170 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROT... Lus10023184
[exp]
5.5 0.8821
AT5G18670 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3... Lus10012804
[exp]
5.7 0.9050
AT4G34000 bZIP AtABF3, ABF3, D... DC3 PROMOTER-BINDING FACTOR 5,... Lus10019850
[exp]
9.1 0.9101
AT4G31830 unknown protein Lus10010682
[exp]
13.1 0.9079
AT1G45249 bZIP AtABF2, ATAREB1... ABSCISIC ACID RESPONSIVE ELEME... Lus10009755
[exp]
14.3 0.8451
AT2G15790 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptid... Lus10012059
[exp]
19.6 0.8806

Lus10003937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.