Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72340 566 / 0 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT1G53900 563 / 0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G53880 563 / 0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT3G07300 95 / 3e-21 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) AT2G44070 82 / 6e-17 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT1G48970 79 / 1e-15 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT5G38640 77 / 6e-15 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT2G05830 68 / 1e-12 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037451 [exp] 538 / 0 AT1G53900 479 / 6e-172 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Lus10037452 [exp] 156 / 9e-47 AT1G53900 108 / 1e-28 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Lus10002762 [exp] 93 / 2e-20 AT3G07300 624 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Lus10016349 [exp] 91 / 7e-20 AT3G07300 624 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Lus10038944 [exp] 80 / 5e-16 AT5G38640 694 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Lus10027234 [exp] 79 / 1e-15 AT5G38640 704 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Lus10001970 [exp] 68 / 3e-12 AT2G05830 538 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4) Lus10008417 [exp] 67 / 8e-12 AT2G05830 543 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G163300 [exp] 606 / 0 AT1G53900 589 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Potri.003G072100 [exp] 602 / 0 AT1G53900 587 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Potri.003G199301 [exp] 98 / 3e-22 AT3G07300 595 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.T126106 [exp] 98 / 3e-22 AT3G07300 595 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.001G026100 [exp] 97 / 8e-22 AT3G07300 632 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.010G068600 [exp] 88 / 6e-19 AT3G07300 482 / 3e-170 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.004G103700 [exp] 81 / 2e-16 AT5G38640 792 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.012G059300 [exp] 77 / 5e-15 AT5G38640 693 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.017G111800 [exp] 76 / 8e-15 AT5G38640 775 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.006G219900 [exp] 71 / 4e-13 AT2G05830 526 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [flax] [poplar] ISOCOT_Fold PF01008 [flax] [poplar] IF-2B Initiation factor 2 subunit family
Representative CDS sequence Show only first row Show all	>Lus10003938 pacid=23166338 polypeptide=Lus10003938 locus=Lus10003938.g ID=Lus10003938.BGIv1.0 annot-version=v1.0 ATGATGTGGAAGAGATCCGCCTCTTTCATCCTCGACAACCGCCAACAACAACCACAACCACCACCATACGCCGCCGCAGAATCCGTCTCCCTCTCCTCTC CACCACCTCCTACCACATCCATGGCCGATCCAATCCCTAACCCAGCCGCCAAAATCTCCGCTTACTACGAGGCCCGCGCCGCCCACCACGGCGTCGTCTC CAGCGACTGGCTCGCCCAGGCCCAGGCCGCCGTCGGCACCAATCCCCACGCCTCCGACGGAGACGATGATAAACCTCAGGGCCCTCCTATTGACAAGCCC TTCAGCGTCATCGACGAGTTTTTTAATTGGCGCAAGCAGCCTGACTTGGCCGAGGCTGTAGCTGCCATCCGAGGTCTTGCCGCCGTGATTCGGAATAGTA CGGCTTCAACCATGATGGAGCTCGAGATTGAGCTCAAGACGGCCTCTGATTCCCTCAAAGCATGGGACACGACATCGATCTCTTTAACAGCAGGATGCGA TTTGTTCCTGCGATACGTTACAAGGACTTCAGCCTTGGAATATGAGGACTTTGATGCAGCTAAGTCCCGACTGCTTGAACGTGCTGAGAAGTTTGGAGAG ATATCTAACAAGGCACGCAGGATCATTGCGATGCTTAGCCAAGATTTCATCTTTGATGGTTGCACTATTTTGGTGCATGGTTTCTCCAGAGTTGTGTTTG AAGTTCTCAAGACCGCTGCTCATAGTAAAAAACGGTTTCGAGTGTTCTGCACAGAGGGAAGGCCGGACAGATCAGGATTACGGCTGTCTAACGAACTGGC CAAGCTCAATGTTCCGGTAAAACTCCTTATAGACTCCGCTGTTGCGTATTCTATGGACGAGGTGGACATGGTCTTTGTCGGAGCTGATGGAGTGGTCGAA AGCGGAGGTATAATCAACATGATGGGGACATACCAGATTGCACTCGTGGCACACAGCATGAATAAACCGGTTTACGTCGCTGCAGAAAGCTACAAGTTTG CTCGTCTGTATCCACTGAGCCAGAAGGACATGGAACCGGCATTACGTCCTATAGATTTCGGAGTGCCAATCCCTTCGAAGGTGGAGGTGGAGACATCAGC ACGGGATTATACGCCGCCTCAGTATCTAACTCTCCTGTTCACGGATCTCGGTGTGCTCACGCCTTCGGTGGTCAGCGATGAACTGATTCAGCTGTACTTG TAG
AA sequence Show only first row Show all	>Lus10003938 pacid=23166338 polypeptide=Lus10003938 locus=Lus10003938.g ID=Lus10003938.BGIv1.0 annot-version=v1.0 MMWKRSASFILDNRQQQPQPPPYAAAESVSLSSPPPPTTSMADPIPNPAAKISAYYEARAAHHGVVSSDWLAQAQAAVGTNPHASDGDDDKPQGPPIDKP FSVIDEFFNWRKQPDLAEAVAAIRGLAAVIRNSTASTMMELEIELKTASDSLKAWDTTSISLTAGCDLFLRYVTRTSALEYEDFDAAKSRLLERAEKFGE ISNKARRIIAMLSQDFIFDGCTILVHGFSRVVFEVLKTAAHSKKRFRVFCTEGRPDRSGLRLSNELAKLNVPVKLLIDSAVAYSMDEVDMVFVGADGVVE SGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLSQKDMEPALRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53900			Eukaryotic translation initiat...		Lus10003938 [exp]	0	1
AT1G19480			DNA glycosylase superfamily pr...		Lus10010824 [exp]	3.0	0.9161
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10009039 [exp]	6.5	0.9114
AT1G61790			Oligosaccharyltransferase comp...		Lus10007647 [exp]	6.6	0.9123
AT3G08640			Protein of unknown function (D...		Lus10003242 [exp]	7.5	0.9110
AT2G32380			Transmembrane protein 97, pred...		Lus10027174 [exp]	9.7	0.9100
AT5G41670			6-phosphogluconate dehydrogena...		Lus10032341 [exp]	12.0	0.8980
AT4G27070		TSB2	tryptophan synthase beta-subun...		Lus10043059 [exp]	12.2	0.9082
AT4G29870			Oligosaccharyltransferase comp...		Lus10035623 [exp]	12.7	0.9078
AT2G39020			Acyl-CoA N-acyltransferases (N...		Lus10023533 [exp]	13.4	0.8968
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10036999 [exp]	13.4	0.8939

Compare expression of checked genes

Lus10003938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.