Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53903 58 / 3e-11 Protein of unknown function (DUF581) (.1) AT1G53885 58 / 3e-11 Protein of unknown function (DUF581) (.1) AT5G49120 56 / 4e-10 Protein of unknown function (DUF581) (.1) AT2G44670 54 / 7e-10 Protein of unknown function (DUF581) (.1) AT5G65040 53 / 2e-09 Protein of unknown function (DUF581) (.1) AT1G22160 53 / 6e-09 Protein of unknown function (DUF581) (.1) AT4G17670 53 / 7e-09 Protein of unknown function (DUF581) (.1) AT4G39795 52 / 1e-08 Protein of unknown function (DUF581) (.1) AT5G47060 52 / 2e-08 Protein of unknown function (DUF581) (.1) AT1G78020 51 / 4e-08 Protein of unknown function (DUF581) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006499 [exp] 54 / 4e-09 AT5G49120 79 / 2e-19 Protein of unknown function (DUF581) (.1) Lus10019672 [exp] 52 / 1e-08 AT1G78020 100 / 2e-27 Protein of unknown function (DUF581) (.1) Lus10037493 [exp] 52 / 1e-08 AT5G49120 83 / 1e-20 Protein of unknown function (DUF581) (.1) Lus10000693 [exp] 52 / 2e-08 AT1G78020 99 / 6e-27 Protein of unknown function (DUF581) (.1) Lus10012417 [exp] 51 / 1e-07 AT3G22550 140 / 4e-38 Protein of unknown function (DUF581) (.1) Lus10019494 [exp] 47 / 4e-07 AT5G47060 95 / 8e-26 Protein of unknown function (DUF581) (.1) Lus10011923 [exp] 45 / 5e-06 AT1G74940 81 / 3e-19 Protein of unknown function (DUF581) (.1) Lus10027642 [exp] 45 / 8e-06 AT1G74940 89 / 6e-22 Protein of unknown function (DUF581) (.1) Lus10022060 [exp] 45 / 1e-05 AT3G63210 133 / 1e-37 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G163400 [exp] 66 / 1e-13 AT1G53903 113 / 5e-33 Protein of unknown function (DUF581) (.1) Potri.003G071900 [exp] 63 / 1e-12 AT1G53903 108 / 4e-31 Protein of unknown function (DUF581) (.1) Potri.010G011700 [exp] 57 / 1e-10 AT5G49120 97 / 2e-26 Protein of unknown function (DUF581) (.1) Potri.008G219800 [exp] 56 / 4e-10 AT5G49120 104 / 4e-29 Protein of unknown function (DUF581) (.1) Potri.002G092900 [exp] 55 / 9e-10 AT1G22160 137 / 5e-42 Protein of unknown function (DUF581) (.1) Potri.005G078600 [exp] 55 / 2e-09 AT1G78020 106 / 3e-29 Protein of unknown function (DUF581) (.1) Potri.005G168900 [exp] 52 / 8e-09 AT1G22160 142 / 2e-44 Protein of unknown function (DUF581) (.1) Potri.003G085700 [exp] 52 / 9e-09 AT4G17670 140 / 2e-43 Protein of unknown function (DUF581) (.1) Potri.007G089200 [exp] 52 / 2e-08 AT1G78020 120 / 8e-35 Protein of unknown function (DUF581) (.1) Potri.001G148700 [exp] 51 / 4e-08 AT4G17670 142 / 5e-44 Protein of unknown function (DUF581) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF04570 [flax] [poplar] zf-FLZ zinc-finger of the FCS-type, C2-C2
Representative CDS sequence Show only first row Show all	>Lus10003939 pacid=23166312 polypeptide=Lus10003939 locus=Lus10003939.g ID=Lus10003939.BGIv1.0 annot-version=v1.0 ATGATCGTCAGCAGTAAAGGAGCTGTTATGGTTGGCCTGCAAACCCTTCTCCAATTGGACACTTCTTCTTCTAAAATCTTCAATCCCCCAATCCATTGTT CTTCCACCAAGATTAATGCTAATTTTGTCGTCACCAAATCCTTCACTGCAACTCCACTTCCTAGAGTACTTGTCAAGAACTACTGCACTCTTTGCAGCAG CGAGTTGAGTCCCAACAAAGACGTCTACATGTACAGGGGAGATCAAGGGTTCTGCAGCATCAAGTGCAGAGACGGCCAGATTCGAATCGACGACGCTAAG CAGTTCAAGGACGAATATAACTACTTATCTTCGAACTCTTATTGCTTCAGTTGTAGCACTGATCGGCACAGCAAGGAATCGTCTTTGTTCGAGATTGCTA GCGGAAGCAGTAGCTCTGGATCCTCCACTGATACGCGTAGCGTCAGCTGCCACGTGGCGAGACCACGTGGCTGCCGACATTTGGTCAACAAACAGACCAG CAGCAATGTTCCAGCACGGCGCTACAACATTCCTCAATACCAACGCCTCCTGTATCACAAACATCGACGTTAA
AA sequence Show only first row Show all	>Lus10003939 pacid=23166312 polypeptide=Lus10003939 locus=Lus10003939.g ID=Lus10003939.BGIv1.0 annot-version=v1.0 MIVSSKGAVMVGLQTLLQLDTSSSKIFNPPIHCSSTKINANFVVTKSFTATPLPRVLVKNYCTLCSSELSPNKDVYMYRGDQGFCSIKCRDGQIRIDDAK QFKDEYNYLSSNSYCFSCSTDRHSKESSLFEIASGSSSSGSSTDTRSVSCHVARPRGCRHLVNKQTSSNVPARRYNIPQYQRLLYHKHRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53903			Protein of unknown function (D...		Lus10003939 [exp]	0	1
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10031607 [exp]	1.4	0.9893
AT5G60330			unknown protein		Lus10018274 [exp]	4.7	0.9804
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10030261 [exp]	5.6	0.9603
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Lus10037726 [exp]	6.6	0.9790
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10006740 [exp]	8.5	0.9180
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10016284 [exp]	9.3	0.9801
AT4G39140			RING/U-box superfamily protein...		Lus10008046 [exp]	10.7	0.8801
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021435 [exp]	11.4	0.9786
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10033738 [exp]	11.8	0.9681
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10012047 [exp]	14.3	0.9699

Compare expression of checked genes

Lus10003939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.