Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60440 96 / 1e-22 MADS AGL62 AGAMOUS-like 62 (.1) AT2G24840 91 / 2e-21 MADS DIA, AGL61 DIANA, AGAMOUS-like 61 (.1) AT4G36590 83 / 2e-18 MADS MADS-box transcription factor family protein (.1) AT5G51860 79 / 2e-17 MADS AGL72 AGAMOUS-like 72, K-box region and MADS-box transcription factor family protein (.1.2) AT2G34440 77 / 6e-17 MADS AGL29 AGAMOUS-like 29 (.1) AT1G72350 78 / 8e-17 MADS MADS-box transcription factor family protein (.1) AT4G24540 77 / 1e-16 MADS AGL24 AGAMOUS-like 24 (.1) AT5G62165 77 / 1e-16 MADS FYF, AGL42 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) AT5G51870 76 / 2e-16 MADS AGL71 AGAMOUS-like 71 (.1.2.3) AT2G45650 77 / 3e-16 MADS AGL6 AGAMOUS-like 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037450 [exp] 350 / 7e-123 AT5G60440 101 / 7e-26 AGAMOUS-like 62 (.1) Lus10015726 [exp] 239 / 4e-79 AT5G60440 102 / 2e-26 AGAMOUS-like 62 (.1) Lus10003481 [exp] 223 / 5e-73 AT5G60440 99 / 7e-25 AGAMOUS-like 62 (.1) Lus10025719 [exp] 81 / 3e-18 AT2G22540 286 / 4e-99 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Lus10031073 [exp] 82 / 5e-18 AT5G60440 129 / 5e-36 AGAMOUS-like 62 (.1) Lus10035456 [exp] 81 / 9e-18 AT5G60440 124 / 5e-34 AGAMOUS-like 62 (.1) Lus10030663 [exp] 79 / 3e-17 AT2G24840 122 / 2e-34 DIANA, AGAMOUS-like 61 (.1) Lus10035942 [exp] 81 / 6e-17 AT2G22540 307 / 1e-104 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Lus10030824 [exp] 77 / 1e-16 AT2G24840 124 / 4e-35 DIANA, AGAMOUS-like 61 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G118900 [exp] 153 / 2e-45 AT5G60440 123 / 4e-34 AGAMOUS-like 62 (.1) Potri.007G113800 [exp] 89 / 8e-21 AT5G60440 191 / 4e-60 AGAMOUS-like 62 (.1) Potri.009G084200 [exp] 87 / 4e-20 AT5G60440 211 / 2e-68 AGAMOUS-like 62 (.1) Potri.017G040700 [exp] 86 / 1e-19 AT5G60440 122 / 5e-34 AGAMOUS-like 62 (.1) Potri.004G130900 [exp] 85 / 1e-19 AT3G04100 140 / 5e-42 AGAMOUS-like 57 (.1) Potri.017G047300 [exp] 86 / 2e-19 AT5G60440 185 / 2e-57 AGAMOUS-like 62 (.1) Potri.009G084100 [exp] 85 / 2e-19 AT5G60440 163 / 2e-49 AGAMOUS-like 62 (.1) Potri.004G131100 [exp] 84 / 3e-19 AT2G34440 137 / 2e-41 AGAMOUS-like 29 (.1) Potri.002G105600 [exp] 83 / 2e-18 AT2G22540 288 / 3e-99 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.004G002400 [exp] 81 / 4e-18 AT5G60440 107 / 3e-28 AGAMOUS-like 62 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10003940 pacid=23166331 polypeptide=Lus10003940 locus=Lus10003940.g ID=Lus10003940.BGIv1.0 annot-version=v1.0 ATGACCAGCGGCGCAAGAACCACGGCGGCGGGTAAGAAATCGAAGCCCGAGGCTTCGGCGGCTGCGGCGGCGATGAAAAAGCCGAGCAAAGGCCGCCAGA AAATCGAGATAAAGAAGGTCGAAAACGACCCCCACCGCCACGTCACCTTCTCGAAGCGCAAGAACGGGCTCTTCAAGAAGGCGACGGAGCTCTCGACCCT CTGCGGCGCTCAGGTGGCGGTCATCCTCTTCTCGCAGCACCACAAGGTCTTCTCCTGCGGCCGGCCCGACGTGGACTCGGTGCTCCACCGCTACGACCTC CACCGGCTCCGCGAGAGTCAAATCCCGAATTTAACCCTGAACAATGACGTGAATTATGGCGATTGCAAGGGTAGTTTCGGGATCGGGAGCGAGAGCGCAG TGCAGGAGCAGGAGTACGTGAGAGCGGTTGAGAGGCTGGAGGAAGGGAAGAGGTACGTGGCGGAGATGGCGGCGTTGGGAGGTGATCCGGCGGCGGCGGG ATTTTGGTGGGAGAATTGGGCGGTGGAGAAGATGGAGGAGAAGGATGAGGTTCAGTCGTATAAGGATTCGTTGGTGGAGCTGAGGGAGAAGGTTTCGGCT CGGATCGATTCGATGACAGCTGAGTCGGGTGGGGTTCGGAATAATGTGACCGATTTTAATCTGAATTGGAGGAACGATCCTATCGCCCGAGAGAATCCAT TGGTATTGAGGAAGAGCCGTACTGGTGGTGTAGTGAGGGGTAGTGCACCGCCGATGCAGTGGATTGCAGCTGCTGTGCCGATGATCATCAGCATGTGCTA CGTACTCTGGTTAGTGTTCTTTGTTTCATCTCGATCGATTGGTCACGGGTTCCTATTTGTGACGAAAATCATGGCGTTGCAACTTCGCTAG
AA sequence Show only first row Show all	>Lus10003940 pacid=23166331 polypeptide=Lus10003940 locus=Lus10003940.g ID=Lus10003940.BGIv1.0 annot-version=v1.0 MTSGARTTAAGKKSKPEASAAAAAMKKPSKGRQKIEIKKVENDPHRHVTFSKRKNGLFKKATELSTLCGAQVAVILFSQHHKVFSCGRPDVDSVLHRYDL HRLRESQIPNLTLNNDVNYGDCKGSFGIGSESAVQEQEYVRAVERLEEGKRYVAEMAALGGDPAAAGFWWENWAVEKMEEKDEVQSYKDSLVELREKVSA RIDSMTAESGGVRNNVTDFNLNWRNDPIARENPLVLRKSRTGGVVRGSAPPMQWIAAAVPMIISMCYVLWLVFFVSSRSIGHGFLFVTKIMALQLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10003940 [exp]	0	1
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10000453 [exp]	1.7	0.9154
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10016323 [exp]	3.0	0.9051
AT5G48540			receptor-like protein kinase-r...		Lus10038227 [exp]	4.2	0.9082
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10017693 [exp]	5.3	0.8738
AT5G24130			unknown protein		Lus10039333 [exp]	5.5	0.8436
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001009 [exp]	7.3	0.8361
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10026262 [exp]	7.5	0.8428
AT4G20860			FAD-binding Berberine family p...		Lus10038446 [exp]	13.8	0.8290
AT1G11770			FAD-binding Berberine family p...		Lus10023366 [exp]	14.1	0.8682
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10013675 [exp]	17.3	0.7803

Compare expression of checked genes

Lus10003940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.