Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029951 [exp] 497 / 7e-177 AT5G53840 45 / 9e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10001533 [exp] 94 / 2e-21 ND 38 / 0.009 Lus10014200 [exp] 73 / 3e-14 ND / Lus10003943 [exp] 72 / 7e-14 AT3G59160 50 / 1e-06 F-box/RNI-like superfamily protein (.1) Lus10039271 [exp] 61 / 3e-10 AT5G56820 88 / 5e-19 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029952 [exp] 53 / 2e-07 AT5G03100 68 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10029083 [exp] 46 / 4e-05 AT1G67390 54 / 6e-08 F-box family protein (.1) Lus10037440 [exp] 46 / 4e-05 AT1G69630 84 / 5e-17 F-box/RNI-like superfamily protein (.1) Lus10035325 [exp] 44 / 4e-05 AT5G02920 42 / 4e-05 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G050800 [exp] 44 / 0.0001 AT2G39490 264 / 1e-84 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003941 pacid=23166323 polypeptide=Lus10003941 locus=Lus10003941.g ID=Lus10003941.BGIv1.0 annot-version=v1.0 ATGCATGAACGATCAGAGATCCCCACAGCAGACGAGCAAGAAGACATAATCTCATCGTTACCGGACGATGTCATCTTCGAAATCCTCGATCACCTACAAT CCCTAGGTGAAGCTTCGAAATCCTGCACACAGTCAAAGACATGGTTCCGCCTATGGCAGTCCTACCTCGCCCCGATTTTCGACGAGTCCCGGTCTACCAA CAGACTCAAGGGATTATTAATCAACGACGACCAGGAGAAGATCTTCCAGCTGCAGAAAGGCAGCAACTACACCGGTAGTGATGAAACCGGACTTGGCTAT GTAGTTGTCGTCGATTATTCCTCTCTCGCGTGTGAAACGGAACAGCACCGCATTCCACGAGGGGTGCTGCAATCTTCGCGATTTCACGGCCTTCAAGTCC TCAAGTTTCGGAATTTCGACTTTTCTGGCTATACAAACGTTGAGGACAATAAACCCTTTGCGGATCTCGGAAGCTCCCTCAGGGAGCTATGCCTAGACCG GGTTAGCTTCCTTGATGAGCGAATTTCGAACGACAAAATCAAAGCTGCCTCTCTATTGGAGACATTGACCCTCTCCTGGTTCAATGAAGAGATCAAGACG CTTGAAATTCGAAACCATCCGAACCTGAAAACCCTAGAAGTGGTGAATACTCCCAGCTTGACGGATTTTGAGATTACAGGGGCTCATGGACTCAAAACCC TACACCTTCAAGTCTTGAGCGAGTGTGACACGATAAGAATTCCGTCCAGATGGAATCTCAAAGTACTATACATTGATGGAGTTGTGAAGTTGACTGAGAA TGATCTTAACAATTTGATCTTGAAGACGTCATCTCTAGAGTGCCTCACATTGATCAATACCGGTCAAGTTCGGAAGCTGTGGATGGTCGGTAATCCTAAG CTTCAAGGGTTCACACTTCACTACGAGTTTCGGCGCAGTACTCCGCCTAATGGTGATCCGGAATTGACATTGTTACAGGGGGGGAATCCAAGAAATCAGA AGCTGGCCGGCTGGCGTCATTCTACTGTTACATCATCGGCGGCAACAACGTCGACAAGTTGA
AA sequence Show only first row Show all	>Lus10003941 pacid=23166323 polypeptide=Lus10003941 locus=Lus10003941.g ID=Lus10003941.BGIv1.0 annot-version=v1.0 MHERSEIPTADEQEDIISSLPDDVIFEILDHLQSLGEASKSCTQSKTWFRLWQSYLAPIFDESRSTNRLKGLLINDDQEKIFQLQKGSNYTGSDETGLGY VVVVDYSSLACETEQHRIPRGVLQSSRFHGLQVLKFRNFDFSGYTNVEDNKPFADLGSSLRELCLDRVSFLDERISNDKIKAASLLETLTLSWFNEEIKT LEIRNHPNLKTLEVVNTPSLTDFEITGAHGLKTLHLQVLSECDTIRIPSRWNLKVLYIDGVVKLTENDLNNLILKTSSLECLTLINTGQVRKLWMVGNPK LQGFTLHYEFRRSTPPNGDPELTLLQGGNPRNQKLAGWRHSTVTSSAATTSTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003941 [exp]	0	1
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10001658 [exp]	1.0	1.0000
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10027892 [exp]	2.4	1.0000
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10010119 [exp]	3.7	1.0000
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039560 [exp]	3.7	1.0000
AT5G39130			RmlC-like cupins superfamily p...		Lus10015129 [exp]	5.3	1.0000
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017177 [exp]	5.9	1.0000
					Lus10017294 [exp]	6.5	1.0000
					Lus10022112 [exp]	6.5	0.8010
AT4G04960			Concanavalin A-like lectin pro...		Lus10039837 [exp]	7.5	1.0000
AT1G57790			F-box family protein (.1)		Lus10019204 [exp]	8.1	0.7938

Compare expression of checked genes

Lus10003941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.