Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28680 402 / 6e-127 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT3G51550 403 / 8e-127 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT3G04690 394 / 8e-124 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT5G39000 382 / 5e-119 Malectin/receptor-like protein kinase family protein (.1) AT5G38990 382 / 5e-119 Malectin/receptor-like protein kinase family protein (.1) AT5G54380 371 / 4e-115 THE1 THESEUS1, protein kinase family protein (.1) AT3G46290 363 / 2e-112 HERK1 hercules receptor kinase 1 (.1) AT5G59700 362 / 6e-112 Protein kinase superfamily protein (.1) AT4G39110 357 / 1e-109 Malectin/receptor-like protein kinase family protein (.1) AT5G61350 356 / 1e-109 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032971 [exp] 1186 / 0 AT3G51550 706 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10032976 [exp] 619 / 0 AT3G51550 682 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10029945 [exp] 531 / 3e-179 AT3G51550 424 / 1e-137 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10022728 [exp] 405 / 5e-128 AT3G51550 1184 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10014185 [exp] 405 / 1e-127 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10016907 [exp] 400 / 4e-126 AT3G04690 967 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10042537 [exp] 387 / 1e-121 AT3G04690 942 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10021998 [exp] 385 / 1e-120 AT3G04690 929 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10038595 [exp] 357 / 1e-115 AT5G54380 718 / 0.0 THESEUS1, protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G096400 [exp] 409 / 1e-134 AT3G51550 451 / 6e-151 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G095900 [exp] 412 / 5e-130 AT3G51550 845 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.016G138700 [exp] 410 / 1e-129 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.006G110000 [exp] 407 / 2e-128 AT3G51550 1256 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.010G145600 [exp] 406 / 3e-128 AT3G04690 1027 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096800 [exp] 401 / 1e-126 AT3G51550 823 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096600 [exp] 400 / 1e-125 AT3G51550 829 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096000 [exp] 400 / 1e-125 AT3G51550 832 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.008G105500 [exp] 399 / 2e-125 AT3G04690 999 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.005G055200 [exp] 399 / 3e-125 AT5G28680 1026 / 0.0 ANXUR2, Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10003942 pacid=23166317 polypeptide=Lus10003942 locus=Lus10003942.g ID=Lus10003942.BGIv1.0 annot-version=v1.0 ATGAAGACGAGATTGGGTGCACACCTCTGTCTCTCTACTCTTTGCCTTGCTCTTTCTATTACCCATCATCTTGCCTATGCTGCCGACAAGTACAAACCGG TCGATCACATATTCGTGGACTGCGGTTCCAATACTGCGGGAACTGATGAAGACAATCTGAATTGGGAGCCGGACTATGCCACCTCAAAATACCTCCAAGT GGAAGAAGGGGCATCACTTCCAGCGACGTCCATAACACTAGATCGTTCAAGTTTCCTACCATCGGTCCCGTACAGAACCGCGCGGTTGTCTCGCTCCCAA TTCACCTACGCCTTCCCCGTCACCTCCGGTCAGAAGTTCATCCGCCTCCACTTCTTCCCTGCCAATTACCCACCGGATTACAACAAATCAGCCGCCTCTT TCTCCGTCAGAGCCGCCTCCTTCATTCTCCTAAACAACTTCAGTGCGGAGCTCCGTGCACAAGCACTCTGCCAAGACAGGTTCCACATGGAGTTCTGCTT AGACGTGGAACCAGATCAGCACCTCCTAAACCTAACCTTCACTCCCAGCCCCGGGGCGTATGCTTTCATCAACGGAATTGAAGTCGTGTCCATGGCCACG AATCTATACTACACCAACCCGGACGATCCTGGAGGCCCACTCACGATCGGAACTCATAATCAGCGGGTTGAAATTTTCACCGCACTGCAGCTCATGTACA GAGTCAATGTTGGCGGCAATTACATCCCTCCCAACGCCGACACCGGCATGTATCGGAGGTGGGAGTCTGACCGGAACCTCGATAAGTATTTTGTAAATGC TCCAAGCAGTTTCTACGAAAACACCTCGATTCAGCTTGATTACAAGAACAAAGACGAGATTCAACGGGTAGCAGCCCCGGATCCAGTCTACCAAACTGCC CTCGGAATGTCAAACGACACCACCATAAACCTCTCCTACAACCTCACATGGATGTTTCAGGTTGACCCCTTCTTCACCTATTTCGTTCGGCTCCATTTTT GTGAGATCAATCCGATTATATCCGCAGAGGCGAACAGGAGTTTCTGGGTCCATATCATGGATCAAACTGTTCAGGTTTGTGTGGATGTCATTCAGGAAGC TGGTGGGAATGGAATCCCTCTGTTCAAAGATTACTTGGCGAGAATGGACGCAGCTCAGAATAACAACCTGTTTATTGCTCTTTCTCCTTTTGAGGAGGCC AGCACTTACGTCAACGCCATCCTCAATGGAGTTGAAATCTACAAATTGAGCTCCTCCGACAATAATCTAGCCGGACCAAACCCTGACCCACCACCTATTC AATCACCGCCAGTGTCGTCATTGTCAAAATCTAGAAGAAAAAGGACTAAATTACTCGCTGCTATAGCCGGCGGAGGCATTCTTTCAGGTCTGTTGGTACT CTCCCTTTCACTCTTGCTCATCGTTAGGAAGAAGCTTAGAGTTAAGGGCCGAAAGCACTGCCACATCGGAGGCTCTGCTTCTCCTTCTCCAAGGTTTGCA AAATTTTCATTCATGGAGTCAAATTCGTGGGGGACATCCAAATACTCATTATCCGCGCCGCCCTCGTATCATTGCCGGCGATTTTCACTATCTGAGATCG CAACCGCCACCAGGGATTTCGACGAAGATTTCATAATCGGAGCTGGAGGGTTTGGCAACGTCTACAAAGGAATAATCAACAACGGCGAAAAGGTGGCCAT CAAGAGGCTGAATCCAGGGTCACAGCAAGGCGAGAACGAGTTCAAAACAGAGATCGAGATGCTATCCCAGCTTAGACACATTCACCTCGTATCCCTAATC GGATACTGCTACGACGATGGCGAGATGATCCTGGTATACGATTACATGTACAACGGCACACTCCAAGATCACCTCTACAAGACTGATAAGCCTCCCATTT CGTGGAAGCAACGGCTGGAGATCTGCATCTGCGCTGCTCGAGGGCTTCAATACCTTCATTCGGGAGCAGACAATAGCATCATCCATCGCGATGTTAAGAC CACCAACATCTTACTGGACGAGAACTGGGTGGCCAAGGTGTCCGATTTCGGGCTGTCGAAAATCGGACCGGGAGCTCCGAATGCGCACGTTAGCACGGTG GTGAAAGGAAGCTTCGGGTACTTCGATCCGGAGTACTACCGCCTGCAATGGCTGACAGAGAAATCAGATGTGTACTCATTCGGGGTGGTGCTGTGGGAAG TTCTGTCGGGTCGTCCGCCGATTATTCGAACGGGGAACAACAGTGAGGCAGTGAGCTTGGCAGAGCAGGCAAAGCAAAGTTACCGAAGCGGAAGAGTTAG GGAAATGGTCGACCCGAATTTGGATGGGGAAATTGCAGAGGAGTGTCTACACAAGTTTGCAGAGGTTGCGGTGAGTTGCTTGAGGGATAAGGGAGTTGAT AGGCCATCGATGGAGGATGTGGTCTGGGGGCTTGCATTCGCCATGGAGTTACAGGAGAACGGCGGTAGGGGCGTGAAGTTACTAGAGAAGAAGCAAGTTG AGGACGAATTCCCGACGATGATGAATGGTCCTTCAGGAGGCAGCAGTGACAGTGGTGGTTCAAGCATGTTCAGCATAAACATGAGATGGCATTTGGTTCG CAAATGA
AA sequence Show only first row Show all	>Lus10003942 pacid=23166317 polypeptide=Lus10003942 locus=Lus10003942.g ID=Lus10003942.BGIv1.0 annot-version=v1.0 MKTRLGAHLCLSTLCLALSITHHLAYAADKYKPVDHIFVDCGSNTAGTDEDNLNWEPDYATSKYLQVEEGASLPATSITLDRSSFLPSVPYRTARLSRSQ FTYAFPVTSGQKFIRLHFFPANYPPDYNKSAASFSVRAASFILLNNFSAELRAQALCQDRFHMEFCLDVEPDQHLLNLTFTPSPGAYAFINGIEVVSMAT NLYYTNPDDPGGPLTIGTHNQRVEIFTALQLMYRVNVGGNYIPPNADTGMYRRWESDRNLDKYFVNAPSSFYENTSIQLDYKNKDEIQRVAAPDPVYQTA LGMSNDTTINLSYNLTWMFQVDPFFTYFVRLHFCEINPIISAEANRSFWVHIMDQTVQVCVDVIQEAGGNGIPLFKDYLARMDAAQNNNLFIALSPFEEA STYVNAILNGVEIYKLSSSDNNLAGPNPDPPPIQSPPVSSLSKSRRKRTKLLAAIAGGGILSGLLVLSLSLLLIVRKKLRVKGRKHCHIGGSASPSPRFA KFSFMESNSWGTSKYSLSAPPSYHCRRFSLSEIATATRDFDEDFIIGAGGFGNVYKGIINNGEKVAIKRLNPGSQQGENEFKTEIEMLSQLRHIHLVSLI GYCYDDGEMILVYDYMYNGTLQDHLYKTDKPPISWKQRLEICICAARGLQYLHSGADNSIIHRDVKTTNILLDENWVAKVSDFGLSKIGPGAPNAHVSTV VKGSFGYFDPEYYRLQWLTEKSDVYSFGVVLWEVLSGRPPIIRTGNNSEAVSLAEQAKQSYRSGRVREMVDPNLDGEIAEECLHKFAEVAVSCLRDKGVD RPSMEDVVWGLAFAMELQENGGRGVKLLEKKQVEDEFPTMMNGPSGGSSDSGGSSMFSINMRWHLVRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10003942 [exp]	0	1
					Lus10039892 [exp]	7.5	0.9314
					Lus10032968 [exp]	11.4	0.9212
AT3G57240		BG3	"beta-1,3-glucanase 3", beta-1...		Lus10027859 [exp]	12.4	0.8632
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Lus10003004 [exp]	13.9	0.9203
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10006825 [exp]	14.0	0.8914
AT3G23110		EMB2800, AtRLP3...	EMBRYO DEFECTIVE 2800, recepto...		Lus10006824 [exp]	14.2	0.8897
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10003481 [exp]	16.0	0.9194
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10036896 [exp]	17.9	0.9190
					Lus10000834 [exp]	18.4	0.8449
					Lus10016111 [exp]	18.5	0.9106

Compare expression of checked genes

Lus10003942 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.