Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59160 50 / 1e-06 F-box/RNI-like superfamily protein (.1) AT3G58900 47 / 6e-06 F-box/RNI-like superfamily protein (.1.2.3.4) AT3G59170 48 / 7e-06 F-box/RNI-like superfamily protein (.1) AT3G58880 46 / 2e-05 F-box/RNI-like superfamily protein (.1) AT3G59150 45 / 4e-05 F-box/RNI-like superfamily protein (.1) AT3G58860 45 / 5e-05 F-box/RNI-like superfamily protein (.1) AT5G22670 45 / 5e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G41840 45 / 7e-05 F-box/RNI-like superfamily protein (.1) AT3G59200 44 / 9e-05 F-box/RNI-like superfamily protein (.1) AT4G03220 44 / 0.0001 Protein with RNI-like/FBD-like domains (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035325 [exp] 89 / 3e-21 AT5G02920 42 / 4e-05 F-box/RNI-like superfamily protein (.1) Lus10029951 [exp] 78 / 9e-16 AT5G53840 45 / 9e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029999 [exp] 66 / 1e-13 ND 37 / 4e-04 Lus10027507 [exp] 70 / 8e-13 AT1G01580 475 / 1e-152 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10042272 [exp] 68 / 2e-12 AT4G03220 65 / 4e-11 Protein with RNI-like/FBD-like domains (.1) Lus10030031 [exp] 57 / 4e-10 AT2G04230 53 / 4e-09 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Lus10018543 [exp] 61 / 1e-09 AT1G03510 534 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10037440 [exp] 60 / 1e-09 AT1G69630 84 / 5e-17 F-box/RNI-like superfamily protein (.1) Lus10028664 [exp] 59 / 3e-09 AT5G50260 59 / 6e-09 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G146500 [exp] 54 / 6e-08 AT5G02920 64 / 2e-11 F-box/RNI-like superfamily protein (.1) Potri.017G146300 [exp] 54 / 1e-07 AT5G02700 71 / 8e-13 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 52 / 3e-07 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.012G099400 [exp] 50 / 1e-06 AT5G44950 77 / 1e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G104300 [exp] 50 / 1e-06 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.017G146400 [exp] 48 / 8e-06 AT3G28410 79 / 2e-15 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 47 / 8e-06 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.001G337200 [exp] 47 / 9e-06 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.001G395000 [exp] 46 / 3e-05 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003943 pacid=23166325 polypeptide=Lus10003943 locus=Lus10003943.g ID=Lus10003943.BGIv1.0 annot-version=v1.0 ATGGATAAGAAAGCATCAACAAAAAAACTCGCCACCGCCGCCGCAGTAATCCCCAGCCAGGAAGGGCCGGAAGACCGAATATCGATGTTACCCGACGAGA TCATCCACCACATCCTCTCCGGGCTACGCTCCCCGATACAGGTGGCGCAATTCAACATCCTGTCCAAAAAATGGCCCCGCATCATTCAGTCTTACCCCAT TCTCGAATTCTACGACGACAACTATCACCGACGACCGGAGGAATCGCAACGTAGACTCGCGAAAGCCATCTTGGAGAAGTTCTCCCACCGAGGTACCGTC GAATCTGTCGTGGCCATCAGAATCAAAATCACATTCTACGAGGATTTCTACTCCGGTTTCCACGCCCGTATCTTGGATTTGGCTTCCAACTTTCCGCTCC TTCGAGAGATCGATATCAAATTCGGCAAGTATTGTATTTCTCATCTCTATGGCAGACGACCTGCCTACGAGGACATGCCAACAGAATACAGGCATGGAAT CCCCAAAAGCTTCCTCCTCACACCAAATGGCAAGCGATTTGCTCACCTTGATACCCTCAAGTTGCAAGATTGCAGTTTCTATTTGTACAAAAACACGACG CATTTCGCATGTGTCGCCAGCTCCCTCAAGGTGCTTTCTCTACAGAACGTCGACGGGTTGATTGATGTGCATGGCATAATTGATCATGCTGCCTCTAACC TGGAGACGTTGAGTTTGAAAAATATGAGCGATGAGTTGGGAAAGAAGTTGCAGATTCGGAACCATCCAAACCTCAAAGTCCTGGAACTTGCTGATCTTTA CCTCGATCTCCTCCAGATCGGAGGACTCGACTCCCTAGAACAAGTCCGTGTAACCAACATATGCATGAAGAAGTTTAAAATTTGGTCCACGCCAAATCTC AAAGTAGTGTACAGCAAAGGTGTTCATGGAACTGGATTGACGGCGCTTAACGAGTTTATTTCCACTCAGCTGAAGAAGACAACTAGCTAG
AA sequence Show only first row Show all	>Lus10003943 pacid=23166325 polypeptide=Lus10003943 locus=Lus10003943.g ID=Lus10003943.BGIv1.0 annot-version=v1.0 MDKKASTKKLATAAAVIPSQEGPEDRISMLPDEIIHHILSGLRSPIQVAQFNILSKKWPRIIQSYPILEFYDDNYHRRPEESQRRLAKAILEKFSHRGTV ESVVAIRIKITFYEDFYSGFHARILDLASNFPLLREIDIKFGKYCISHLYGRRPAYEDMPTEYRHGIPKSFLLTPNGKRFAHLDTLKLQDCSFYLYKNTT HFACVASSLKVLSLQNVDGLIDVHGIIDHAASNLETLSLKNMSDELGKKLQIRNHPNLKVLELADLYLDLLQIGGLDSLEQVRVTNICMKKFKIWSTPNL KVVYSKGVHGTGLTALNEFISTQLKKTTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59160			F-box/RNI-like superfamily pro...		Lus10003943 [exp]	0	1
AT2G24210		AtTPS10	terpene synthase 10 (.1)		Lus10006355 [exp]	1.0	0.9699
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Lus10032980 [exp]	1.4	0.9691
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Lus10042882 [exp]	2.0	0.9194
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10014695 [exp]	3.5	0.9258
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014693 [exp]	4.2	0.8998
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10023625 [exp]	5.0	0.9156
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10039705 [exp]	5.3	0.8984
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10037294 [exp]	10.5	0.8721
AT5G42905			Polynucleotidyl transferase, r...		Lus10034950 [exp]	14.7	0.8546
					Lus10039498 [exp]	14.9	0.8273

Compare expression of checked genes

Lus10003943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.