Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01070 350 / 3e-116 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G01390 338 / 1e-111 UDP-Glycosyltransferase superfamily protein (.1) AT1G01420 338 / 1e-111 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT3G50740 319 / 4e-104 UGT72E1 UDP-glucosyl transferase 72E1 (.1) AT5G66690 316 / 5e-103 UGT72E2 UDP-Glycosyltransferase superfamily protein (.1) AT5G26310 315 / 2e-102 UGT72E3 UDP-Glycosyltransferase superfamily protein (.1) AT2G18570 308 / 4e-100 UDP-Glycosyltransferase superfamily protein (.1) AT4G36770 250 / 1e-77 UDP-Glycosyltransferase superfamily protein (.1) AT2G18560 237 / 1e-73 UDP-Glycosyltransferase superfamily protein (.1) AT3G16520 235 / 5e-72 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029452 [exp] 361 / 2e-120 AT4G01070 582 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005950 [exp] 356 / 3e-118 AT4G01070 573 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10024037 [exp] 342 / 9e-113 AT2G18570 412 / 3e-140 UDP-Glycosyltransferase superfamily protein (.1) Lus10005951 [exp] 336 / 1e-110 AT4G01070 510 / 5e-179 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029453 [exp] 331 / 7e-109 AT4G01070 515 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10041713 [exp] 332 / 1e-108 AT2G18570 415 / 3e-141 UDP-Glycosyltransferase superfamily protein (.1) Lus10024035 [exp] 330 / 4e-108 AT3G50740 486 / 3e-169 UDP-glucosyl transferase 72E1 (.1) Lus10041715 [exp] 324 / 8e-106 AT3G50740 478 / 6e-166 UDP-glucosyl transferase 72E1 (.1) Lus10039588 [exp] 297 / 1e-95 AT4G01070 419 / 2e-143 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G041800 [exp] 489 / 1e-170 AT4G01070 390 / 9e-132 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G041900 [exp] 404 / 5e-138 AT4G01070 295 / 2e-95 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G096100 [exp] 363 / 2e-121 AT4G01070 610 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.007G030400 [exp] 352 / 6e-117 AT3G50740 566 / 0.0 UDP-glucosyl transferase 72E1 (.1) Potri.007G030500 [exp] 352 / 1e-116 AT2G18570 494 / 8e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G096000 [exp] 351 / 1e-116 AT4G01070 544 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.003G138200 [exp] 347 / 1e-114 AT4G01070 539 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G168600 [exp] 340 / 3e-112 AT4G01070 595 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.007G030300 [exp] 324 / 4e-106 AT3G50740 496 / 1e-173 UDP-glucosyl transferase 72E1 (.1) Potri.007G029800 [exp] 314 / 4e-102 AT3G50740 478 / 3e-166 UDP-glucosyl transferase 72E1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10003944 pacid=23144772 polypeptide=Lus10003944 locus=Lus10003944.g ID=Lus10003944.BGIv1.0 annot-version=v1.0 ATGTCCAAATTCCATGTGGCGGGGCCTATGTCCAAATTCCATGTGGCGGTCCTTGCTAGCCCCGGTTTAGGACACGTCACCCCTCTCTTCGAGCTCGCTA AACGCCTCGTCACCCACTTTGACCTCCACGTCACTTTCTTGGTCATAACCTCCACCATCCCTTCCCCCGCACAGGACCAACTTCTCCACTCCGCGACCCT CCCGCAAGACCTCCACGTTGTCGACCTCCCTCCCGTCGATGCATCATCCCTTGTCACTGACGACATGCTCCTCCTCACCCAGCTCTGCGTCATGGTACAA CACAGCCTCAACTCATCGCTAAAGTCCGCCCTCCTCCAAATCAAACCCAAAGCACTAATCATCGACATATTCTGCACTCAAGCTTTCGACATCTGTAAGG ACCTCCATATCCCAGTTTACTCCTTCTTCACCGCATCCGCAGCCCTCATGACCTTATCCCTCTATCTCCCCACCATGGACCGAGATATCCAAGGCCAATT CGTTTACCTTCCGGAACCCGTAAATGTCCCTGGATGTACCCCAATCAGAACCCACGATTTACTCGACCAAGTTCGTAATCGGAACAACGATGAATACAAA TGGTACCTTTACCACGTCGCCAGGCTCCCCTTAGCAGCCGGGATTTTCCTCAATTCGTGGGAAGGAATCGAACCCGTTTCTATTAAGGCCGTAAAAGAGC ACTCCTTCTACAAAGAAATTCCAATTCCGCCAGTTTTTTCAGTGGGGCCTTTAATCAAACAGGTGGAGTGCATCCCTCTAACCGACTCAGATCTTGACCT CCTCCGATGGCTAGACGACCAGCCGTCGGAATCGGTTTTGTTCGTGGCGCTGGGAAGCGGGGGCACGTTCACGATCCATCAACTTGAAGAATTGGCAGTG GGATTGGAGCAGAGTGAGCAGAGATTCGTGCTGGTAGTCCGATTTCCGTCGGATAGAAGCTCTGCTTCGTTTTTCGACGTGGGGAGTGGGAAGGAGGATG ATGATCCGGTGGCGTATTTGCCTGAAGGGTTTGTAGAGAGGACGAAGGGGAAAGGGATGGTGGTGAGGTCATGGGCTCCTCAGGCGGAGGTGCTGAGTCA TCCGTCAACGGGAGGGTTCCTGTCGCACTGCGGGTGGAACTCGACGCTGGAGAGCGTGAGCAACGGAGTGCCGATGATCGCGTGGCCACTATACGCGGAG CAGAGGATGAACGCAACGATACTGGAGGAGGAGGCCGGGGTGGCGGTGAAGACCTGCAGAGTTGTTGGGGAAGATGTGGTTGTCGGAAGGGAGGAGATAG AGAAGGTGGTGAGGTTGGTGATGGAAGGTGAGAAAGGTAAGCTGTTGAGGAAGAAGGCCAAATTGCTCAAGAAAAGTGCCGCTCTAAGTTTGAATGACGG CGGAGATTCTTGCGAGTCACTGGCGAAGGTTGTTCGAGGCTGGAAATTAATGTGA
AA sequence Show only first row Show all	>Lus10003944 pacid=23144772 polypeptide=Lus10003944 locus=Lus10003944.g ID=Lus10003944.BGIv1.0 annot-version=v1.0 MSKFHVAGPMSKFHVAVLASPGLGHVTPLFELAKRLVTHFDLHVTFLVITSTIPSPAQDQLLHSATLPQDLHVVDLPPVDASSLVTDDMLLLTQLCVMVQ HSLNSSLKSALLQIKPKALIIDIFCTQAFDICKDLHIPVYSFFTASAALMTLSLYLPTMDRDIQGQFVYLPEPVNVPGCTPIRTHDLLDQVRNRNNDEYK WYLYHVARLPLAAGIFLNSWEGIEPVSIKAVKEHSFYKEIPIPPVFSVGPLIKQVECIPLTDSDLDLLRWLDDQPSESVLFVALGSGGTFTIHQLEELAV GLEQSEQRFVLVVRFPSDRSSASFFDVGSGKEDDDPVAYLPEGFVERTKGKGMVVRSWAPQAEVLSHPSTGGFLSHCGWNSTLESVSNGVPMIAWPLYAE QRMNATILEEEAGVAVKTCRVVGEDVVVGREEIEKVVRLVMEGEKGKLLRKKAKLLKKSAALSLNDGGDSCESLAKVVRGWKLM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10003944 [exp]	0	1
					Lus10018997 [exp]	4.7	0.9056
AT5G61820			unknown protein		Lus10033851 [exp]	7.4	0.8839
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10003143 [exp]	8.2	0.8983
					Lus10028522 [exp]	8.5	0.8942
AT5G63710			Leucine-rich repeat protein ki...		Lus10025703 [exp]	8.8	0.9000
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10033886 [exp]	8.9	0.8742
AT3G16330			unknown protein		Lus10038274 [exp]	9.9	0.8994
AT1G60783			unknown protein		Lus10026693 [exp]	12.0	0.8896
AT5G39950		ATTRXH2, ATTRX2...	Arabidopsis thioredoxin h2, th...		Lus10036695 [exp]	12.1	0.8677
AT3G24770		CLE41	CLAVATA3/ESR-RELATED 41 (.1)		Lus10011868 [exp]	12.4	0.8977

Compare expression of checked genes

Lus10003944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.