Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47750 310 / 5e-107 PEX11A peroxin 11A (.1) AT3G47430 96 / 1e-23 PEX11B peroxin 11B (.1) AT1G01820 50 / 6e-07 PEX11C peroxin 11c (.1) AT2G45740 49 / 6e-07 PEX11D peroxin 11D (.1.2.3) AT3G61070 46 / 7e-06 PEX11E peroxin 11E (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029260 [exp] 473 / 8e-171 AT1G47750 318 / 4e-110 peroxin 11A (.1) Lus10038925 [exp] 107 / 6e-28 AT3G47430 321 / 3e-112 peroxin 11B (.1) Lus10027213 [exp] 61 / 2e-11 AT3G47430 200 / 8e-66 peroxin 11B (.1) Lus10041368 [exp] 53 / 7e-08 AT1G01820 416 / 1e-149 peroxin 11c (.1) Lus10036560 [exp] 51 / 2e-07 AT1G01820 416 / 2e-149 peroxin 11c (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G042000 [exp] 353 / 6e-124 AT1G47750 327 / 8e-114 peroxin 11A (.1) Potri.002G134000 [exp] 352 / 3e-123 AT1G47750 332 / 8e-116 peroxin 11A (.1) Potri.003G108900 [exp] 106 / 2e-27 AT3G47430 324 / 1e-113 peroxin 11B (.1) Potri.001G124400 [exp] 105 / 2e-27 AT3G47430 329 / 1e-115 peroxin 11B (.1) Potri.002G153800 [exp] 50 / 5e-07 AT2G45740 400 / 1e-143 peroxin 11D (.1.2.3) Potri.014G076400 [exp] 47 / 3e-06 AT2G45740 392 / 4e-140 peroxin 11D (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05648 [flax] [poplar] PEX11 Peroxisomal biogenesis factor 11 (PEX11)
Representative CDS sequence Show only first row Show all	>Lus10003945 pacid=23144773 polypeptide=Lus10003945 locus=Lus10003945.g ID=Lus10003945.BGIv1.0 annot-version=v1.0 ATGGATTCATCATCCACCCCAACCACCAACCTTCTTCCGGCGTTGGAAAAGGAATCCTCCGCCGCTCCATCAAAGCCCGCTAAGCCCGTCGTTCTGCCAA GCTCGAAGAAGAGCACCGATGATCGAGGTTTCCTGAACCACTTGGAAGCCTACCTGTCCAAGCGCGACGGCGTCGATAAGCTCCTCAAGATCTCCCGTTA CGCAACGAAGATCATCTTATCATCCTCCGTCCTCCCCGAAACCCTAATCTTGACTGGCCGCCTCAAGAGCTTTGAGTCTAGTGTCGGCCTCAGTCGGAAA GCCTTCCGCCTAGGGAAATTCGTGCAGGACGTCAATTCTCTCAGGTCCTCCCATTCCCATTCCACAAAAGAATCGATCCTCAATCTCATCGCCTACGGCG GCGAAGGCGTCTACTACTTCGTCGAGCAATTTGTCTGGCTGTCGAAATCGGGGCTAATCGACGGGAGGCACGCCAAGGGTTTGGGGAAGATGAGCGCCTG GGCTGAATTCGTCGGTTATGTGGGGAGCATTTCGTTGAAATTTAGGGATTTGAAGGGATTGGAAAGGGAGGAAGCGGCGTTGAGATCTACAATCGAGATA GCGGAATCAAGAGAGGTTGGGTGCGGAGAGGAAGAGGAGAGGATGACGAAACTAAAGGAGGTGAAGCTGATGAAGAGAGTGTCGATTGTTCAGGATTTGG CTGATGGGTTTATGGCTTTGGCGGATATCCGGGATGGGAAAGGGAAGCTATCGTCGCCGTTGTTCTTGTCTTGTGCTGGTCTTTTGTCTGCTATCATTAG TACCCAGAAGAACTGGGTATCCTGCTGA
AA sequence Show only first row Show all	>Lus10003945 pacid=23144773 polypeptide=Lus10003945 locus=Lus10003945.g ID=Lus10003945.BGIv1.0 annot-version=v1.0 MDSSSTPTTNLLPALEKESSAAPSKPAKPVVLPSSKKSTDDRGFLNHLEAYLSKRDGVDKLLKISRYATKIILSSSVLPETLILTGRLKSFESSVGLSRK AFRLGKFVQDVNSLRSSHSHSTKESILNLIAYGGEGVYYFVEQFVWLSKSGLIDGRHAKGLGKMSAWAEFVGYVGSISLKFRDLKGLEREEAALRSTIEI AESREVGCGEEEERMTKLKEVKLMKRVSIVQDLADGFMALADIRDGKGKLSSPLFLSCAGLLSAIISTQKNWVSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47750		PEX11A	peroxin 11A (.1)		Lus10003945 [exp]	0	1
AT5G09640		SNG2, SCPL19	SINAPOYLGLUCOSE ACCUMULATOR 2,...		Lus10007731 [exp]	5.5	0.9422
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10042934 [exp]	9.4	0.9401
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10041088 [exp]	9.7	0.9363
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10034271 [exp]	10.8	0.9135
AT2G17080			Arabidopsis protein of unknown...		Lus10025124 [exp]	10.8	0.9402
AT4G03965			RING/U-box superfamily protein...		Lus10015152 [exp]	10.9	0.9403
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10010871 [exp]	11.7	0.9357
AT1G61620			phosphoinositide binding (.1)		Lus10018409 [exp]	17.3	0.9088
AT1G18270			ketose-bisphosphate aldolase c...		Lus10008754 [exp]	17.7	0.9352
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020360 [exp]	19.4	0.9287

Compare expression of checked genes

Lus10003945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.