Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80950 458 / 9e-161 Phospholipid/glycerol acyltransferase family protein (.1) AT2G45670 134 / 2e-34 calcineurin B subunit-related (.1.2) AT5G60620 58 / 4e-09 GPAT9 glycerol-3-phosphate acyltransferase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032706 [exp] 585 / 0 AT1G80950 378 / 5e-130 Phospholipid/glycerol acyltransferase family protein (.1) Lus10032707 [exp] 167 / 3e-51 AT1G80950 125 / 1e-35 Phospholipid/glycerol acyltransferase family protein (.1) Lus10015853 [exp] 120 / 1e-29 AT2G45670 672 / 0.0 calcineurin B subunit-related (.1.2) Lus10009312 [exp] 120 / 2e-29 AT2G45670 671 / 0.0 calcineurin B subunit-related (.1.2) Lus10036544 [exp] 118 / 1e-28 AT2G45670 692 / 0.0 calcineurin B subunit-related (.1.2) Lus10041384 [exp] 115 / 8e-28 AT2G45670 647 / 0.0 calcineurin B subunit-related (.1.2) Lus10023947 [exp] 57 / 1e-08 AT5G60620 655 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Lus10014443 [exp] 52 / 3e-07 AT5G60620 617 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Lus10036259 [exp] 43 / 0.0003 AT4G30580 340 / 6e-116 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G042200 [exp] 556 / 0 AT1G80950 506 / 7e-180 Phospholipid/glycerol acyltransferase family protein (.1) Potri.002G134100 [exp] 508 / 3e-180 AT1G80950 476 / 1e-167 Phospholipid/glycerol acyltransferase family protein (.1) Potri.014G074300 [exp] 125 / 3e-31 AT2G45670 710 / 0.0 calcineurin B subunit-related (.1.2) Potri.002G151800 [exp] 120 / 2e-29 AT2G45670 716 / 0.0 calcineurin B subunit-related (.1.2) Potri.004G183300 [exp] 60 / 9e-10 AT5G60620 686 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Potri.009G143200 [exp] 57 / 7e-09 AT5G60620 679 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10003950 pacid=23144770 polypeptide=Lus10003950 locus=Lus10003950.g ID=Lus10003950.BGIv1.0 annot-version=v1.0 ATGGAGACAGAGCTCAACGATGTCAAGCCCGTGCCTCCCAAGGGGCACCTCATCTCCTCTTCTACCGAATCGCACCCTCCACCATCCGCCCGCGACGATG CTTCTGTAAAGGACGACCGGCCCCTCCTCAAATCCGACTCCTCCGGTGATAGCGGAAGAAGAATCTCCTCTGACAGCCTAGACGAGCTCAACAAGAAGTA CCCGGCGTTCGCTCGCCATGACGTCTACGGGCCCCTAGGACGTGGCGAGCTTCCGTTAGGGGAGAAGTTCCTGCTTGGCGTCGCTTGCCTCACGCTCCTC CCGATGCGTGTTGTGCTGGCGTTCAGTATCTTGTTCTCCTACTACTTGGTGTGTAGGATTTGTACGCTCTTCTCGTCCCCCAATCGGGACGAGGCGGAGG AACAGGAGGATTTTGCTCACTTGGGAGGCTGGCGGAGGGCGGTGATTGTCTGCTCCGGGAGGTTTCTATCCAGAGTCATGCTGTTTGTGTTAGGGTTTTA TTGGATCAGCGAGAGTTTTAGGGATTTAGAAGAGCAAGAGAAATCTCTGCCTCAAGGCAAGTCCTCCTCTCAGAATGAGGGCAAAAGTCAATCTCGACCA CAAGAAAGACCAGGGGCAATAGTTTCCAACCATATCTCACATGTTGATATTCTGTATCACATGTCATCATCGTTTTCCAGTTTTGTTGCCAAGAGATCAG TGGCTAAACTTCCTCTAGTTGGTCTCATCAGCAAGTGCCTTGGCTGCATCTTTGTTCAGCGGGAGTCAAAGTCATCTGACTTCAAAGGTGTTGCAGGTAT TGTGACACAGAGAATTAAAGAAGCCCAGGAGAATCCATCTGTTCCCATGATGATGTTGTTTCCCGAAGGCACGACTACAAACGGAGACTTCCTCATCCCA TTCAAGACAGGTGGATTTTTGGCTGGAGCGCCTATTGTTCCAGTGATCCTGCGGTATCCATACCAAAGGTTTAGTCTTGCTTGGGATTCTATGTCGGGGC TGCGCCATGTAATTCTTCTCTTCTGTCAATTCGTAAATCACTTGGAGGTGATAAGGCTACCTGTTTACTACCCTTCCCAAGAAGAGAAAGATAATCCTAA ACTGTATGCTAATAATATTCGGCGGTTGATGGCACGCGAGGGTAATCTAGTAATGTCAGAGATCGGACTAGCCGAGAAGAGAGTATACATTGCTGCACTC GACGGTAATAATAGCCTGCCTAGTGTTTTGCATCAGAAAGACGATTGA
AA sequence Show only first row Show all	>Lus10003950 pacid=23144770 polypeptide=Lus10003950 locus=Lus10003950.g ID=Lus10003950.BGIv1.0 annot-version=v1.0 METELNDVKPVPPKGHLISSSTESHPPPSARDDASVKDDRPLLKSDSSGDSGRRISSDSLDELNKKYPAFARHDVYGPLGRGELPLGEKFLLGVACLTLL PMRVVLAFSILFSYYLVCRICTLFSSPNRDEAEEQEDFAHLGGWRRAVIVCSGRFLSRVMLFVLGFYWISESFRDLEEQEKSLPQGKSSSQNEGKSQSRP QERPGAIVSNHISHVDILYHMSSSFSSFVAKRSVAKLPLVGLISKCLGCIFVQRESKSSDFKGVAGIVTQRIKEAQENPSVPMMMLFPEGTTTNGDFLIP FKTGGFLAGAPIVPVILRYPYQRFSLAWDSMSGLRHVILLFCQFVNHLEVIRLPVYYPSQEEKDNPKLYANNIRRLMAREGNLVMSEIGLAEKRVYIAAL DGNNSLPSVLHQKDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80950			Phospholipid/glycerol acyltran...		Lus10003950 [exp]	0	1
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Lus10007433 [exp]	5.2	0.8418
AT1G69220		SIK1	Protein kinase superfamily pro...		Lus10037070 [exp]	10.5	0.7793
AT2G24300			Calmodulin-binding protein (.1...		Lus10019056 [exp]	20.8	0.7946
AT4G01290			unknown protein		Lus10007916 [exp]	28.0	0.7238
AT3G58600			Adaptin ear-binding coat-assoc...		Lus10000617 [exp]	30.2	0.7584
AT5G45900		ATAPG7, ATG7, A...	AUTOPHAGY-RELATED 7, AUTOPHAGY...		Lus10015289 [exp]	39.8	0.7441
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Lus10037495 [exp]	48.2	0.7097
AT1G05270			TraB family protein (.1)		Lus10015104 [exp]	50.7	0.7600
AT3G56680			Single-stranded nucleic acid b...		Lus10034141 [exp]	51.4	0.6746
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10006581 [exp]	52.8	0.7228

Compare expression of checked genes

Lus10003950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.