Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47740 358 / 6e-126 PPPDE putative thiol peptidase family protein (.1.2) AT4G17486 226 / 9e-75 PPPDE putative thiol peptidase family protein (.1.2) AT5G47310 224 / 1e-73 PPPDE putative thiol peptidase family protein (.1) AT5G25170 223 / 2e-73 PPPDE putative thiol peptidase family protein (.1) AT1G80690 219 / 7e-72 PPPDE putative thiol peptidase family protein (.1) AT2G25190 216 / 2e-70 PPPDE putative thiol peptidase family protein (.1) AT4G31980 201 / 4e-60 unknown protein AT4G25680 79 / 2e-17 PPPDE putative thiol peptidase family protein (.1) AT4G25660 78 / 5e-17 PPPDE putative thiol peptidase family protein (.1) AT3G07090 56 / 3e-09 PPPDE putative thiol peptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032708 [exp] 490 / 2e-178 AT1G47740 357 / 1e-125 PPPDE putative thiol peptidase family protein (.1.2) Lus10040485 [exp] 286 / 4e-98 AT1G47740 272 / 6e-92 PPPDE putative thiol peptidase family protein (.1.2) Lus10011291 [exp] 283 / 6e-97 AT1G47740 270 / 3e-91 PPPDE putative thiol peptidase family protein (.1.2) Lus10018326 [exp] 229 / 4e-76 AT5G25170 314 / 3e-110 PPPDE putative thiol peptidase family protein (.1) Lus10005341 [exp] 226 / 8e-75 AT5G25170 303 / 9e-106 PPPDE putative thiol peptidase family protein (.1) Lus10017127 [exp] 225 / 1e-74 AT5G25170 312 / 3e-109 PPPDE putative thiol peptidase family protein (.1) Lus10039492 [exp] 221 / 3e-73 AT1G47740 213 / 2e-69 PPPDE putative thiol peptidase family protein (.1.2) Lus10040170 [exp] 221 / 8e-73 AT4G17486 283 / 9e-98 PPPDE putative thiol peptidase family protein (.1.2) Lus10041021 [exp] 221 / 1e-72 AT5G25170 309 / 5e-108 PPPDE putative thiol peptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G134200 [exp] 398 / 3e-142 AT1G47740 346 / 3e-121 PPPDE putative thiol peptidase family protein (.1.2) Potri.014G042300 [exp] 394 / 1e-140 AT1G47740 339 / 2e-118 PPPDE putative thiol peptidase family protein (.1.2) Potri.T126004 [exp] 340 / 2e-119 AT1G47740 337 / 2e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.009G113168 [exp] 339 / 6e-119 AT1G47740 335 / 6e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.004G151200 [exp] 331 / 7e-116 AT1G47740 335 / 1e-116 PPPDE putative thiol peptidase family protein (.1.2) Potri.003G080300 [exp] 234 / 1e-77 AT5G47310 295 / 9e-102 PPPDE putative thiol peptidase family protein (.1) Potri.001G154400 [exp] 227 / 8e-75 AT5G47310 308 / 4e-107 PPPDE putative thiol peptidase family protein (.1) Potri.006G261500 [exp] 226 / 1e-74 AT5G25170 313 / 5e-109 PPPDE putative thiol peptidase family protein (.1) Potri.018G021700 [exp] 226 / 2e-74 AT5G25170 301 / 2e-104 PPPDE putative thiol peptidase family protein (.1) Potri.003G180400 [exp] 221 / 1e-72 AT1G80690 303 / 1e-105 PPPDE putative thiol peptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05903 [flax] [poplar] Peptidase_C97 PPPDE putative peptidase domain
Representative CDS sequence Show only first row Show all	>Lus10003951 pacid=23144778 polypeptide=Lus10003951 locus=Lus10003951.g ID=Lus10003951.BGIv1.0 annot-version=v1.0 ATGAAACTGGGGTCGAAGAAAGGATGGAAATCAATGATGCCCCTTAGGCTGAGGAGTAAAACAGGTACAGCTACACGTTTTTGTTTGTTCCCAAAACAAA GGACAGTTGGGTATGGTCCAGACAAAGCACCAGTCTATCTCAATGTCTATGACTTGACACCCATGAATGGCTATGTCTATTGGGCTGGTCTTGGCATCTT TCACTCCGGTGTCCAAGTTCATGGGGTAGAGTATGCATTCGGAGCGCATGACTATCCGACGAGTGGCGTATTCGAGGTTGAGCCAAGGCAGTGTCCTGGC TTTAAGTTCAGAAGGTCTGTATTTGTTGGAACCACGTCCATGGATCCCAATCAGGTTAGGGAGTTTATGAAGCAGCACGCAGCGAGCTACCATGGCGATA CCTACCACTTGATTGTTAAGAATTGCAATCATTTCTGCAAGGACGTTTGTCACAAGCTGACGGGTAGACCCATTCCAAAATGGGTGAATCGACTAGCACA AATAGGATCGGTATGCAACTGCATACTTCCGGAGTCTCTGAAGATAACAGCGGATCCAAATGGAGAAGCATGCGACAACGAAAAGACAAGGCTGAGAGGT GCATTCAGTTGCTTGTCTTCAATCTCTATGAGACAGAAGCAGCTATCGACGTCTTCATTAATCCTACAGTCTCCATTGAAAGGTTGCTTACCGTGGGAAT TGAAGAGGTCAATCAGCAGTTTGCTCAAGGAGAGATGA
AA sequence Show only first row Show all	>Lus10003951 pacid=23144778 polypeptide=Lus10003951 locus=Lus10003951.g ID=Lus10003951.BGIv1.0 annot-version=v1.0 MKLGSKKGWKSMMPLRLRSKTGTATRFCLFPKQRTVGYGPDKAPVYLNVYDLTPMNGYVYWAGLGIFHSGVQVHGVEYAFGAHDYPTSGVFEVEPRQCPG FKFRRSVFVGTTSMDPNQVREFMKQHAASYHGDTYHLIVKNCNHFCKDVCHKLTGRPIPKWVNRLAQIGSVCNCILPESLKITADPNGEACDNEKTRLRG AFSCLSSISMRQKQLSTSSLILQSPLKGCLPWELKRSISSLLKER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47740			PPPDE putative thiol peptidase...		Lus10003951 [exp]	0	1
AT2G45250			Integral membrane protein hemo...		Lus10003319 [exp]	2.0	0.8811
AT1G47740			PPPDE putative thiol peptidase...		Lus10032708 [exp]	2.0	0.8759
AT3G29290		EMB2076	embryo defective 2076, Pentatr...		Lus10018198 [exp]	4.9	0.8562
AT2G34560			P-loop containing nucleoside t...		Lus10038499 [exp]	5.0	0.8659
AT4G30845			unknown protein		Lus10026098 [exp]	5.3	0.8884
AT3G13510			Protein of Unknown Function (D...		Lus10010315 [exp]	10.4	0.8333
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10020413 [exp]	14.7	0.8401
AT3G20390			endoribonuclease L-PSP family ...		Lus10021523 [exp]	19.3	0.8526
AT4G33670			NAD(P)-linked oxidoreductase s...		Lus10012456 [exp]	21.8	0.8389
AT4G15510			Photosystem II reaction center...		Lus10000614 [exp]	22.1	0.8774

Compare expression of checked genes

Lus10003951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.