Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49970 310 / 1e-103 SVR2, NCLPP5, CLPR1 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1) AT1G09130 150 / 2e-42 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT4G17040 123 / 1e-32 HON5, CLPR4 happy on norflurazon 5, CLP protease R subunit 4 (.1) AT5G45390 103 / 4e-25 NCLPP3, NCLPP4, CLPP4 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) AT1G66670 94 / 8e-22 NCLPP3, NCLPP4, CLPP3 CLP protease proteolytic subunit 3 (.1) AT1G12410 87 / 2e-19 EMB3146, CLP2, NCLPP2, CLPR2 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1) AT1G02560 87 / 2e-19 NCLPP5, NCLPP1, CLPP5 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) AT1G11750 87 / 3e-19 NCLPP6, NCLPP1, CLPP6 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) AT5G23140 74 / 4e-15 NCLPP7, NCLPP2, CLPP2 nuclear-encoded CLP protease P7 (.1) ATCG00670 65 / 4e-12 PCLPP, ATCG00670.1, CLPP1 CASEINOLYTIC PROTEASE P 1, plastid-encoded CLP P (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020990 [exp] 646 / 0 AT1G49970 308 / 1e-102 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1) Lus10012156 [exp] 102 / 5e-25 AT5G45390 293 / 1e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Lus10029891 [exp] 105 / 7e-25 AT3G05510 255 / 1e-79 Phospholipid/glycerol acyltransferase family protein (.1.2) Lus10007589 [exp] 102 / 9e-25 AT5G45390 293 / 2e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Lus10020649 [exp] 95 / 2e-22 AT1G09130 151 / 4e-44 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Lus10002422 [exp] 91 / 8e-21 AT1G02560 361 / 4e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10001450 [exp] 91 / 2e-20 AT1G02560 365 / 1e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10040981 [exp] 86 / 4e-19 AT5G23140 350 / 1e-122 nuclear-encoded CLP protease P7 (.1) Lus10013434 [exp] 85 / 1e-18 AT5G23140 347 / 3e-121 nuclear-encoded CLP protease P7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G089300 [exp] 318 / 1e-106 AT1G49970 459 / 7e-162 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1) Potri.001G295266 [exp] 186 / 7e-58 AT1G49970 306 / 5e-105 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1) Potri.013G017166 [exp] 141 / 7e-39 AT1G09130 451 / 2e-159 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.003G083300 [exp] 119 / 6e-31 AT4G17040 441 / 2e-157 happy on norflurazon 5, CLP protease R subunit 4 (.1) Potri.004G092100 [exp] 107 / 2e-26 AT1G66670 441 / 2e-156 CLP protease proteolytic subunit 3 (.1) Potri.003G103300 [exp] 93 / 2e-21 AT5G45390 383 / 9e-135 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Potri.014G119700 [exp] 89 / 9e-20 AT1G02560 493 / 6e-178 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.002G195200 [exp] 89 / 9e-20 AT1G02560 474 / 2e-170 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.004G152900 [exp] 86 / 6e-19 AT1G11750 397 / 4e-141 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Potri.009G114001 [exp] 82 / 7e-18 AT1G11750 353 / 2e-123 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00574 [flax] [poplar] CLP_protease Clp protease
Representative CDS sequence Show only first row Show all	>Lus10003953 pacid=23157478 polypeptide=Lus10003953 locus=Lus10003953.g ID=Lus10003953.BGIv1.0 annot-version=v1.0 ATGGCTACCTCTCTTCTCTCGCCGATCTCTTATCCTTCTACGAATCTTTCCTCCATTCCCTCTGTTGGTCATCCAAAACCGTCATTTATCTCCAATTCGA AGCTTATCTACTCCAGTAACCAGAGGCTGGCTGTTTCTCCACTGAGATGCTATGCAGAGTCTCTGAACCATATCCCCAAGCAGTTCAAGGAAGAGAATCT CGACGACGGAGTGAAGGAAAACTTCAAAAATGTGCCGGAAAGGTTGTATGGTCTTACTGCTTCGCAAATGCGAATGTTTATGACCGGAAATACTCCCATT CAAAGCCTAGCTGAAAGAACGATGGAGGAAAACATTACATCCAAACTTAGCTATCAGGATAATGCCCGGATGTATACTTTATCAGATTTTAACGAAAAGG GTAGGGTTACATCCATGCTTAAAGTTAGAAGGGAAGGTGGGCGGCCAGCTCCTCGTCCTCGTGATCTGCCTTCTAGGTTGTTAGGTGCTCGAATTGTTTA TCTGGGAATGCCGACAGTATCAGCTGTCGCGAAGCATATTATCAGTCAGCTTATGTACTTGAACTATAAAGATCCAAGATCATCTATATACATGTACATA AACTCAACTGGGTCACAGGATTTGGACGGGCAGCTTGTAGGTTCGGAGGCCGGTGCATTCAGTATTGCTGATTATATGTCTATGAGCAGGGCAAAGATAC ATACAGTAAACCTTTCTTTGGCATTTGGTCAAGCTGCAATGCTTCTCTCCCTTGGAACCAAAGGCTGTCGGTATATACAGCCCCACGGTTATACAAAACT TTATCTGCCTTCGGTGTATGAATCAAGTGGGCGGGTGACAGACATGTCGATCAAGGCCGAGGAATTAGAGATAAATTCACGATTCTATCTTGAGCTGTTG TCGGAGGGAACTGGCAAGTCTGAGCAACAACTACTGGAAGATATCCATATACCTAAATTTTTCAAGGCACAAGAGGCCATTGATTATGGATTGGCAGACA AGATTGTAGGGCCTGAGGGTATGAAACATCTGAAAAAGAATTAG
AA sequence Show only first row Show all	>Lus10003953 pacid=23157478 polypeptide=Lus10003953 locus=Lus10003953.g ID=Lus10003953.BGIv1.0 annot-version=v1.0 MATSLLSPISYPSTNLSSIPSVGHPKPSFISNSKLIYSSNQRLAVSPLRCYAESLNHIPKQFKEENLDDGVKENFKNVPERLYGLTASQMRMFMTGNTPI QSLAERTMEENITSKLSYQDNARMYTLSDFNEKGRVTSMLKVRREGGRPAPRPRDLPSRLLGARIVYLGMPTVSAVAKHIISQLMYLNYKDPRSSIYMYI NSTGSQDLDGQLVGSEAGAFSIADYMSMSRAKIHTVNLSLAFGQAAMLLSLGTKGCRYIQPHGYTKLYLPSVYESSGRVTDMSIKAEELEINSRFYLELL SEGTGKSEQQLLEDIHIPKFFKAQEAIDYGLADKIVGPEGMKHLKKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Lus10003953 [exp]	0	1
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Lus10002287 [exp]	2.0	0.8885
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Lus10020405 [exp]	3.0	0.9071
AT5G41460			Protein of unknown function (D...		Lus10017514 [exp]	4.2	0.8900
AT3G63510			FMN-linked oxidoreductases sup...		Lus10019714 [exp]	4.4	0.8445
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Lus10020990 [exp]	6.8	0.9012
AT4G17040		HON5, CLPR4	happy on norflurazon 5, CLP pr...		Lus10011014 [exp]	13.6	0.8712
AT4G13360			ATP-dependent caseinolytic (Cl...		Lus10043253 [exp]	15.6	0.8396
AT1G21600		PTAC6	plastid transcriptionally acti...		Lus10018866 [exp]	15.7	0.8861
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10017191 [exp]	18.6	0.8880
AT2G21350			RNA-binding CRS1 / YhbY (CRM) ...		Lus10017965 [exp]	20.1	0.8666

Compare expression of checked genes

Lus10003953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.