Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19590 583 / 0 BUB3.1 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G49910 579 / 0 BUB3.2 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.2, Transducin/WD40 repeat-like superfamily protein (.1) AT1G69400 221 / 5e-70 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G80670 192 / 2e-58 RAE1 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G15850 57 / 8e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT2G33340 53 / 2e-07 MAC3B MOS4-associated complex 3B (.1.2.3) AT5G23430 50 / 1e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 50 / 2e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 49 / 2e-06 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 49 / 3e-06 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023814 [exp] 662 / 0 AT3G19590 610 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014343 [exp] 211 / 8e-66 AT1G69400 313 / 6e-106 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10026051 [exp] 209 / 2e-65 AT1G69400 318 / 9e-109 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10026095 [exp] 199 / 4e-61 AT1G80670 632 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10002323 [exp] 200 / 6e-61 AT1G80670 608 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033710 [exp] 51 / 1e-06 AT1G71840 489 / 2e-166 transducin family protein / WD-40 repeat family protein (.1) Lus10031629 [exp] 47 / 1e-05 AT1G71840 488 / 2e-172 transducin family protein / WD-40 repeat family protein (.1) Lus10018458 [exp] 46 / 4e-05 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014477 [exp] 45 / 4e-05 AT2G33340 784 / 0.0 MOS4-associated complex 3B (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G295100 [exp] 628 / 0 AT3G19590 593 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G089200 [exp] 614 / 0 AT3G19590 602 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G162700 [exp] 214 / 3e-67 AT1G69400 350 / 7e-121 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G092100 [exp] 202 / 1e-62 AT1G69400 333 / 2e-114 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G180000 [exp] 179 / 2e-53 AT1G80670 590 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G048100 [exp] 176 / 4e-52 AT1G80670 583 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 61 / 4e-10 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 52 / 2e-07 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 46 / 2e-05 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.019G087200 [exp] 45 / 4e-05 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10003954 pacid=23157479 polypeptide=Lus10003954 locus=Lus10003954.g ID=Lus10003954.BGIv1.0 annot-version=v1.0 ATGGCAGCCGCCGTACCTCCGCCGGGATCGGGCCGCGAGCTCTCTAATCCCCCTACCGAGGGGATCTCCAATCTTCGGTTCTCTAACCTCAGTGACCACC TCCTCGTCTCCTCCTGGGACAAGAGCGTGAGGCTGTACGACGCCAGTGCGAATTCGTTGCTGGGAGAGTTCTTGCACGGTGGAGCTGTGTTGGACTGCTG CTTCCACGATGAATCCTCTGGATTTAGTGCTAGCGCGGACAATCTTGTTCGAAGACTCGTTTTTAATCACGGGAAAGAAGATATTTTGGGGAAGCATGAT GCACCTGTTCGTTGTATAGAGTATTCTTATGCGGCAGGACAAGTAATTACTGGTAGCTGGGACAGAACAGTGAAGTGCTGGGATCCTAGGGGAGCAAGCG GACAAGATCACACTCTTGTTGGTACATATCCACAACCTGAAAGGGTCTATTCTCTATCTCTTGTTGGAAATCGTGTAGTGGTTGCCACAGCAGGAAGACA TGTCAATGTCTATGATTTGAGAAATATGTCTCAACCGGAACAGCAAAGAGAATCGTCGTTAAAATATCAAACAAGATGTGTCCGCTGCTACCCCAATGGC ACAGGTTATGCTCTAAGTTCTGTAGAAGGCCGGGTAGCTATGGAATTTTTTGATCTTTCCGAGGCCGCTCAAGCTAAAAAATATGCATTTAAGTGCCACC GAAAATCAGAAGCTGGAAGAGACATCGTATATCCAGTAAATGCTATTGCATTTCATCCTGTCTACGGTACATTTGCAACTGGAGGCTGCGATGGGTTTGT GAACGTGTGGGATGGTAACAACAAAAAAAGGCTGTATCAGTACTCTAAGTACCCGTCAAGCATAGCGGCACTTTCTTTCAGCAAAGATGGCCGCTTGTTA GCTGTGGCATCTAGTTACACATACGAGGAGGGAGAAAAACCGCACGAGCCAGATGCGATATTTGTCCGCAGTGTGAATGAAGTTGAAGTGAAGCCGAAGC CGAAAGTGTATCCAAACCCGCCTGCGTGA
AA sequence Show only first row Show all	>Lus10003954 pacid=23157479 polypeptide=Lus10003954 locus=Lus10003954.g ID=Lus10003954.BGIv1.0 annot-version=v1.0 MAAAVPPPGSGRELSNPPTEGISNLRFSNLSDHLLVSSWDKSVRLYDASANSLLGEFLHGGAVLDCCFHDESSGFSASADNLVRRLVFNHGKEDILGKHD APVRCIEYSYAAGQVITGSWDRTVKCWDPRGASGQDHTLVGTYPQPERVYSLSLVGNRVVVATAGRHVNVYDLRNMSQPEQQRESSLKYQTRCVRCYPNG TGYALSSVEGRVAMEFFDLSEAAQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPVYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPSSIAALSFSKDGRLL AVASSYTYEEGEKPHEPDAIFVRSVNEVEVKPKPKVYPNPPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Lus10003954 [exp]	0	1
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10023028 [exp]	2.8	0.9432
AT4G02800			unknown protein		Lus10000658 [exp]	6.5	0.9441
AT4G14368			Regulator of chromosome conden...		Lus10030999 [exp]	9.2	0.9257
AT2G37960			unknown protein		Lus10021116 [exp]	10.5	0.9403
AT1G80670		RAE1	RNA export factor 1, Transduci...		Lus10026095 [exp]	13.6	0.8850
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Lus10010816 [exp]	14.6	0.8926
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10043126 [exp]	15.4	0.9303
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Lus10024822 [exp]	16.0	0.9380
AT4G36180			Leucine-rich receptor-like pro...		Lus10042177 [exp]	16.2	0.9293
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10040517 [exp]	16.4	0.9323

Compare expression of checked genes

Lus10003954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.