Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45400 674 / 0 ATRPA70C Replication factor-A protein 1-related (.1) AT4G19130 639 / 0 Replication factor-A protein 1-related (.1) AT2G06510 581 / 0 ATRPA70A, ATRPA1A ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) AT5G08020 295 / 1e-89 ATRPA70B ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) AT5G61000 271 / 3e-80 ATRPA70D Replication factor-A protein 1-related (.1) AT1G52950 69 / 8e-12 Nucleic acid-binding, OB-fold-like protein (.1) AT1G60650 44 / 0.0003 AtRZ-1b AtRZ-1b, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023805 [exp] 1447 / 0 AT5G45400 764 / 0.0 Replication factor-A protein 1-related (.1) Lus10034737 [exp] 480 / 5e-161 AT4G19130 517 / 2e-176 Replication factor-A protein 1-related (.1) Lus10033436 [exp] 426 / 1e-140 AT2G06510 600 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Lus10033272 [exp] 382 / 9e-121 AT5G45400 363 / 2e-114 Replication factor-A protein 1-related (.1) Lus10033435 [exp] 330 / 8e-107 AT2G06510 426 / 4e-147 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Lus10040517 [exp] 281 / 7e-84 AT5G08020 885 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10006548 [exp] 275 / 5e-82 AT5G08020 845 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10021153 [exp] 280 / 5e-81 AT5G08020 884 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10034736 [exp] 129 / 2e-33 AT5G45400 90 / 3e-20 Replication factor-A protein 1-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G102700 [exp] 846 / 0 AT5G45400 892 / 0.0 Replication factor-A protein 1-related (.1) Potri.018G065300 [exp] 629 / 0 AT2G06510 897 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Potri.015G057300 [exp] 289 / 9e-87 AT5G08020 875 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF04057 [flax] [poplar] Rep-A_N Replication factor-A protein 1, N-terminal domain CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle CL0021 [flax] [poplar] OB PF08646 [flax] [poplar] Rep_fac-A_C Replication factor-A C terminal domain CL0021 [flax] [poplar] OB PF01336 [flax] [poplar] tRNA_anti-codon OB-fold nucleic acid binding domain
Representative CDS sequence Show only first row Show all	>Lus10003955 pacid=23157466 polypeptide=Lus10003955 locus=Lus10003955.g ID=Lus10003955.BGIv1.0 annot-version=v1.0 ATGGTGGATCTGACAGTGGGCGCCATTGCTCGTATCACTGGAGGGTCTTCTGTGGTAGACTTCCAGCCTATAGTACAGGTGACGGAGCTGAAGCAGCTCC ATATGAAACAACAGCAGCAGCAGCCACCAGAACGGTTCAAGTTGGTTCTATCCGATGGTTCGCACCTGCAACAGGCCATGCTCGGCACTCAGATCAATTA TTTGGTGAAAGATAATGAATTGCGGACGGGCTCCGTTATCCAGTTGGTCAAGTTCACATGCACCACCGTACAACACCGCATGTTAGTAACCCCTGTTCAA GATTTGTCATTTCATGGGTTTTGTTTGCAAGCTGCTGTAGATTTCAATTTTACTGCACGCATTCCTGTTTCCCTCCTTGAGATTGTTATAATAGTCGAAT TGAAAATCATCGTTGAAGAATGTGGTCTAATTGGGCATCCTGCATTATTGAGACCTCCAGGGCCATCCCCTACGTCGACAGATCGACCAATGAATGCTTA TGCAAGTCCCCAATTATCTGGTGGCGTTGGCAGGGTTGTTTCAAATTTGGATTCGGATCAATCGATGAATGTATACTCTAATCTCCAACCATCTGGTGGT AGTAATTTTGCTGGTAGGGGTGTTTCAAATTTGGATCCGGCTGCTGCTTCTGTTCAGTCTCCTAGGGTCAATCCACCAGACAGTGGTTTTCAGTATGATG CCGGTAGGAATGTTAAAACCAGTGTATCTTCTTTCAGTATGAAGTCCGAAAGTGGTGTTACACCACTAGGATCGGTGCCATTTTCCAACCAGGCTCCTGG CTTACACTACCATAAACAGGATGGTACACGAGCTTCTTCAGCAAGTTATTCTAATATGTCTCGATCAACATATCAGCAGCCACCTGCAATGTACAACAAC AGGGGTCCAATAGCAAGGAATGAAGCTCCTGCAGCAATTTGCCCCATATCTGCTTTGAATCCATACCAGGGTAGGTGGACAATTAAAGCCAGGGTGACTG CAAAAGGAGAAATGAGGCACTATCACAATCCTCGTGGTGAAGGGAAAGTATTCTCTTTTGACCTTCTCGATTCTAACGGTGGTGAAATTAGAGTGACTTG CTTTAATGCCGTTGCGGATCAATTCTACCCCTCTATTGAAGTCGGCAGGGTTTATACAGTTTCGAAAGGAAGCCTAAAGCCTGCCCAAAAGAACTTCAAT CACCTTAATAATGATCTGGAAATTTTTCTTGAGAATGGCTCAATTGTGCAGCAGTGTCATGATGATGACAGTTCAATTCCAAGGCAACAATTCCATTTTC GCCTGATTAGTGAGATTGAGGGGTTGGAAACCAACAGTATCGTTGATCTTATCGGCATTGTATACGTTGTTACTCCAGCGACCTCAATAATGAAGAAAAA TGGTACAGAAACTCAGAAGAGAAGCCTACAGTTGAAAGATACGTCTTGCCGTAGTGTTGAATTAACCCTATGGGGAAACTTCTGTAATTCTGAAGGATAT GAATTGCAAAAGAAGTGTGACTCAGGGAACTTGCCTATTCTGGCAATAAAATCAGGCAGGATTAGTGAATTCAATGGCAAGGCAGTGGGAACTATTTCTA CAAGTCAGCTGTTTATTGACCCAGATATTGAGGAGGCTGGTAACCTGAAACAATGGTTTTACAGGGAAGGGAGGAACGCCTCGTTTGTCTCCATTTCCAA GCAAGTGTCAAGTGCTGGCAGGACTGATGTTCTGAAAACCATCTCTCAAATAAAAGATGAGAGCCTTGGGATGTCTGACACTAAGAAACCAGATTGGATT AGTGTCAATGCAGCTCTCATATTCATAAAGTCTGACAGTTTTATGTACACAGCTTGTCCTATAATGATTGGTGACCGCCCATGCAATAAAAAAGTCTCTG ATAACGGAGATGGGAAGTGGCGGTGTGATAGGTGTGATCAAACAGTTGATGAATGTGATTACAGGTACATCCTCCAGGTTCAGATACAAGACCATACGGG CACAACATGGTCAACTGTTTTCCAGGAATGTGCCGAGCTGCTTTTGGGAGTGTCTGCTAAAGATCTACACTTTATGAAGTTTGAGCAAGAAGATGACGAT GGGTTTGTAAAAGTTCTTCGCAAAGTTTTATTTACCAGATATGTGTTTAAGCTGAAAGTATTGGAGGAAACATTCAATGATGAAGCGCGAGTGAAATCTA CCGTTCTCAAGATAGATAAGGTGAACTGTGTTTCCCACTCCAAAGCTCTTCTGGATTTGATTGGAAAGGACGAATATAATTCCTGCTTCACCTCAAATAA TGACTTTGGGGGACCTATGTCCTGTAATAGCTGTGGTGCCTCGAGCCGTAGCTCTATGAATTGTCCTAGCATCATGGGAGGTCCTCAACAAGCAGTAGGA GTGGACTATATCAGTAGAACTTGCAATGGAGCTGATGCAGGCAGCGGTAGGGGAGGTGAATGCTTCAAGTGTCATCAATCTGGTCACTGGGCCAAAGACT GTCCAGTGTCTGGCAATGGTCCCCAAACTGCCTTTACTTAG
AA sequence Show only first row Show all	>Lus10003955 pacid=23157466 polypeptide=Lus10003955 locus=Lus10003955.g ID=Lus10003955.BGIv1.0 annot-version=v1.0 MVDLTVGAIARITGGSSVVDFQPIVQVTELKQLHMKQQQQQPPERFKLVLSDGSHLQQAMLGTQINYLVKDNELRTGSVIQLVKFTCTTVQHRMLVTPVQ DLSFHGFCLQAAVDFNFTARIPVSLLEIVIIVELKIIVEECGLIGHPALLRPPGPSPTSTDRPMNAYASPQLSGGVGRVVSNLDSDQSMNVYSNLQPSGG SNFAGRGVSNLDPAAASVQSPRVNPPDSGFQYDAGRNVKTSVSSFSMKSESGVTPLGSVPFSNQAPGLHYHKQDGTRASSASYSNMSRSTYQQPPAMYNN RGPIARNEAPAAICPISALNPYQGRWTIKARVTAKGEMRHYHNPRGEGKVFSFDLLDSNGGEIRVTCFNAVADQFYPSIEVGRVYTVSKGSLKPAQKNFN HLNNDLEIFLENGSIVQQCHDDDSSIPRQQFHFRLISEIEGLETNSIVDLIGIVYVVTPATSIMKKNGTETQKRSLQLKDTSCRSVELTLWGNFCNSEGY ELQKKCDSGNLPILAIKSGRISEFNGKAVGTISTSQLFIDPDIEEAGNLKQWFYREGRNASFVSISKQVSSAGRTDVLKTISQIKDESLGMSDTKKPDWI SVNAALIFIKSDSFMYTACPIMIGDRPCNKKVSDNGDGKWRCDRCDQTVDECDYRYILQVQIQDHTGTTWSTVFQECAELLLGVSAKDLHFMKFEQEDDD GFVKVLRKVLFTRYVFKLKVLEETFNDEARVKSTVLKIDKVNCVSHSKALLDLIGKDEYNSCFTSNNDFGGPMSCNSCGASSRSSMNCPSIMGGPQQAVG VDYISRTCNGADAGSGRGGECFKCHQSGHWAKDCPVSGNGPQTAFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19130			Replication factor-A protein 1...		Lus10003955 [exp]	0	1
AT1G01880			5'-3' exonuclease family prote...		Lus10041375 [exp]	2.4	0.7973
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10036074 [exp]	4.0	0.8174
					Lus10028270 [exp]	7.1	0.7889
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10017848 [exp]	8.9	0.7688
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Lus10013086 [exp]	11.8	0.7804
AT2G04940			scramblase-related (.1)		Lus10004532 [exp]	17.8	0.7753
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10017847 [exp]	21.9	0.7327
AT5G53920			ribosomal protein L11 methyltr...		Lus10005914 [exp]	22.2	0.7682
AT1G78910			Pseudouridine synthase family ...		Lus10034804 [exp]	22.9	0.7793
					Lus10019128 [exp]	25.9	0.7378

Compare expression of checked genes

Lus10003955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.