Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31810 697 / 0 AFH14 Formin Homology 14 (.1) AT2G25050 505 / 9e-159 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) AT5G07740 493 / 8e-150 actin binding (.1) AT3G32400 452 / 1e-146 Actin-binding FH2/DRF autoregulatory protein (.1) AT5G58160 475 / 2e-145 actin binding (.1) AT5G07770 399 / 3e-123 Actin-binding FH2 protein (.1.2) AT5G07650 362 / 7e-109 Actin-binding FH2 protein (.1) AT5G07780 346 / 6e-107 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G07760 356 / 3e-106 formin homology 2 domain-containing protein / FH2 domain-containing protein (.1) AT1G42980 232 / 3e-68 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023804 [exp] 1000 / 0 AT1G31810 615 / 0.0 Formin Homology 14 (.1) Lus10007447 [exp] 510 / 2e-159 AT5G58160 604 / 0.0 actin binding (.1) Lus10036612 [exp] 509 / 8e-157 AT5G58160 608 / 0.0 actin binding (.1) Lus10035830 [exp] 503 / 1e-155 AT5G58160 619 / 0.0 actin binding (.1) Lus10024450 [exp] 487 / 8e-151 AT5G58160 600 / 0.0 actin binding (.1) Lus10015724 [exp] 478 / 1e-147 AT5G07740 723 / 0.0 actin binding (.1) Lus10003482 [exp] 417 / 5e-124 AT5G07740 714 / 0.0 actin binding (.1) Lus10017556 [exp] 226 / 2e-65 AT5G07740 392 / 1e-124 actin binding (.1) Lus10015725 [exp] 201 / 8e-59 AT5G07740 282 / 6e-88 actin binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G103800 [exp] 768 / 0 AT1G31810 718 / 0.0 Formin Homology 14 (.1) Potri.006G185601 [exp] 517 / 4e-169 AT5G58160 603 / 0.0 actin binding (.1) Potri.018G019600 [exp] 525 / 4e-163 AT2G25050 636 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.006G263700 [exp] 520 / 7e-162 AT2G25050 627 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.018G108000 [exp] 511 / 3e-160 AT5G58160 600 / 0.0 actin binding (.1) Potri.012G067900 [exp] 512 / 2e-158 AT5G07740 727 / 0.0 actin binding (.1) Potri.015G061001 [exp] 500 / 1e-153 AT5G07740 722 / 0.0 actin binding (.1) Potri.006G185501 [exp] 449 / 4e-145 AT5G58160 598 / 0.0 actin binding (.1) Potri.010G037900 [exp] 133 / 1e-31 AT1G70140 488 / 4e-162 formin 8 (.1) Potri.007G054900 [exp] 129 / 7e-30 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF10409 [flax] [poplar] PTEN_C2 C2 domain of PTEN tumour-suppressor protein CL0154 [flax] [poplar] PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10003956 pacid=23157474 polypeptide=Lus10003956 locus=Lus10003956.g ID=Lus10003956.BGIv1.0 annot-version=v1.0 ATGTCTCTTCTCAGTAGATTCTTCTACAGAAGGCCTCCGGATGGATTGCTCGAGCTTGTCGACAGAGTATATGTGTTCGATTCTTGCTTTTCCACTGAGG TTTTGCCTGATGGTTTGTATGAAATGTATTTACACGAAGCCGTTGGGGAACTGTATGAAGAATTTCCCGACTCTCGTATACTTGCTTTTAATTTCCGCGA GGGCGAGAAGCGGAGTCAATTCGCTGAGATATTGTGCCGGTATGATGTTACTGTTATGGATTATCCACGGCAGTACGAAGGTTGCCCACTGTTACCTTTG TCTCTGGTTCAACATTTCCTTCGAGCCAGTGAGAGCTGGCTTTCACTTGGGAACCGTCAAAATATTATCCTCTTTCATTGCGAGAGAGGGGGCTGGCCAG TCTTGGCCTTCGTATTGGCTAGTTTCTTGATTTTTAAGAAGCTCCACAGCAGTGAACGAAGAACGCTCGAGCTTGTGCATCGTGAAGCTCCAAAGGGCTT CTTGCAACTCTTGTCACCACTGAATCCTTTCCCTTCTCAGCTGCGTTACCTTCAATATGTTGCCAGAAGAAACATTGCATCAGAGTGGCCCCCTCCTGAA CGATTCCTTTCTTTAGATTGTCTCATTCTCCGCGCCATTCCAAGCTTTGACTCAGATAATGGCTGCAGACCAGTCATCCGTATTTTTGGTAGAAATATGC ACTCTACTGGTGGACTTTCGACCCAGATGCTCTTCTCCATGTCCAAGAAGAAGTCTACCATCAAACATTACCGGCAGGCAGACTGTGATGTGATCAAAAT TGACATCCAGTGCTTGGTGCAAGGTGATGTTGTGTTGGAGTGTGTGCACTTGGACTTGGATCCTGAAAGGGAAGTCATGATGTTTCGTGTAATGTTCAAC ACAGCCTTTATACGATCCAACATATTGATCCTCAACTCTGATAACCTGGATATTCTTTGGGATTCAAAGGAACGATATCCAAAAGGCTTTCGAGCAGAGA TTTTATTCGGCGAAGTTGAGAGTTCTTCGCCTCCAAAGGGCCAAAATCCAACTTCAATTTTGAATGGTGAAGTGAAAGGTGGATTACCAATTGAAGCTTT CTCTAGGGTTCAAGAACTCTTCAATGGCTCAGAATGGGTTGATAACAATGATGATGCTGCTTTATGGCTACTGAAGCAACTTTCTGTTTTCAATGATGCT AGAGAACTTTCAAGATTTCAAGCTAAAGGTAGTTCATATGCATCACCCTTTGACTCTGAAGAAGAAAACAATGCCTCTAGCACTGCAGATAGTTCAGATG AAGCATTTGATTTCATTCCAAAGTCTTCAATAGACTCTATGGGGTCATTTGTGCGCAGCACTCTTAATTCCACAGACTTGCCAGTGGAAACTGATGGCCC AGTTGACCCCAACATTAGTTTTGAAACCGAAGGATTGTGTCCACTTGACCTTGAATCTGTTTCATCCTCTCTCGATAAGCAACAGGTTGCTTTCAGTGAG GAAGCTCAACTTTCTTCAGAGGGTCAACGTTCGTTTGCAGATGGACCACCATCACCTCCAAAACTACAGCTCCAAACACCACCCCCACCACCGCCTCCTC CTCAACTTACTATCAGACCTCTACAACACCATGCCCCATTGTGCTGGTCTCTGTTTCGGCCACAGGGGCGCCCCCCCCCCCCCCCCCCTCCACAACTGCC ACCTCCACGTATACAGTCAACAGATAACAATGTGACATCTATTCCTTCTGAACCCACAGCTATTGATTCTTCTAGCAAGCAGGGGCCATCTCCTCCACCA CCACCTCCTCCTCCTTGTTCCACTCCGAGTTCATCATTTTTAACTCCACCGCCACCGCCGCCGCCATCTCTACCTCTACTTTTCACCCCCCCCCCCCCCC GCCGCCGCCATTTCTACCTCTATCTTCTACCTCTACGCCATCGTCTTCTCCACCGCCGGCACCACCACCTCCACCACCACTACTTCTACCTCTTTCTTCT ACTTCTAGGTCATCGACTCCGCCAATGCCACCGCAACCGCCACCACCACCACCATTTGCCTCCAAAACTAATAGTATCCAGCGGCCGCCACCTCCTCCAC CACCACCATTTGCCTCCAAAACCAATAGTATCCAGCCGCCACCTCCTCCACCACCACCATTTGCCTCTAAAACCAATAGTATCCAGCCGCCGCCACCTCC TCCACCACCACCATTTGCCTCTAAAACCAATAGTATCCAGCCGCCGCCACCTACCTCCTGCACCCCTTTCACGTACTAGCTTAGTCTCGTCACCTGCACC TCCACCCCCACCCCCAGCACCGAGGCCTCCAGCCCCTCCTCCAGTACCTGGCCGTGCTGGTCCACCCCCACTGCCTGGAACAAACCGTGCCAGTGTGCCA CCGCCTCCACCTCCTGGCATTGGTAGGGCCAGAACTACTTCTGTTCCTAGTGGTCCCGCAAGAGGGAGAGGTACTGCATCATCTGGAGGTGTCTCTAAGA GAACTTCTTTAAAGCCCTTGCATTGGGTGAAAGTTACTCGAGCTGTGCAAGGAAGTATGTGGGCTGATTCACAGAAGCAGGAGAACAAATCAAGGGCACC TGATATTGATATATCAGAACTTGAGAGCTTGTTTTCAGCTGTATCAGCTTCAGAAGGAAGTACTGCTAGCAAAATTGGTGGTAGACGTGGTTCTAACATC AATAAGCCTGAGAAAGTACAGCTGGTTGACTTACGCAGAGCATATAATTGTGAAATAATGCTTTCTAAAGTTAAGATGCCTTTGCCTGAAATGATTAATG CGATTCTTGCTTTGGATTCTTCAACGCTGGATATTGATCAGGTTGAAAATCTTATCAAATTTTGTCCAACTAAAGAAGAAATGGAAACACTGAAGAATTT TACTGGTGACAAGGAAAGGCTTGGAAAATGTGAACAGTTCTTCATGGAGCTGATGACTGTTCCTAGAGTGGAAGCAAAATTACGTGTATTTGCTTTCAGG ATAACTTTCTCAAGTCAGGTGAATGATTTAAGATGTAATCTCAATACCGTGAATGATGCTGCTAGAGAGGTGAAAGAATCTGAGAAGCTGCGTCAGATTA TGCAAACAATTCTTACACTGGGAAATGCTTTGAATCAAGGCACTGCACGAGGATCTGCCGTGGGATTCAAGCTGGATAGCCTCCTTAAGCTGTCTGATAC GCGTGCAAGAAACAATAAAATGACCTTAATGCACTATTTGTGTAAGCTCCTTGCTGAGAAAATGCCAACATTGCTCGACTTTGGTAAAGACCTTATCCAC TTAGAAGCTGCATCTAAGATTCAATTGAAAACTCTGGCCGAAGAAATGCAAGCTGTGAGTAAAGGTCTTGAGAAGGTTGAGCAGGAACTTGCTGCTTCAG AAAACGACGGTGCTATATCTGCAGGGTTTCAAAAGGCAAGTCAGATTGAATGTTCTAGCATGAATACATTAGAAGTCGAGATATTTAAATTCAAATGTTG GGCTTCCGTTAAATGTATGTACCTTTCTCAGGTATTGAAGAACTTCCTTCTTACTGCTGAAGCTGAAGTAAGGTCGCTTATTTCATTGTACTCTGAAGTG GGAAGAAATGCAGATGCATTGTCGCAGTATTTTGGAGAGGATCCAGCTCGATGCCCCTTTGAACAAGTGACTCAAATCTTGGTGGTGTTCGTGAAAATGT TCAACAAGTCTAGAGATGAAAATGAAAAGCAGGCCGATGCTGAAAAGAAGAAACTGGAAAAGGAAGCTTTGAAGGAGAAGTCGGTTGCCAAGAAAGATGA CAACGACAAGCTGAAACTTGGATTTCAAATTCAGAGACATGCTACCTGA
AA sequence Show only first row Show all	>Lus10003956 pacid=23157474 polypeptide=Lus10003956 locus=Lus10003956.g ID=Lus10003956.BGIv1.0 annot-version=v1.0 MSLLSRFFYRRPPDGLLELVDRVYVFDSCFSTEVLPDGLYEMYLHEAVGELYEEFPDSRILAFNFREGEKRSQFAEILCRYDVTVMDYPRQYEGCPLLPL SLVQHFLRASESWLSLGNRQNIILFHCERGGWPVLAFVLASFLIFKKLHSSERRTLELVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNIASEWPPPE RFLSLDCLILRAIPSFDSDNGCRPVIRIFGRNMHSTGGLSTQMLFSMSKKKSTIKHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFN TAFIRSNILILNSDNLDILWDSKERYPKGFRAEILFGEVESSSPPKGQNPTSILNGEVKGGLPIEAFSRVQELFNGSEWVDNNDDAALWLLKQLSVFNDA RELSRFQAKGSSYASPFDSEEENNASSTADSSDEAFDFIPKSSIDSMGSFVRSTLNSTDLPVETDGPVDPNISFETEGLCPLDLESVSSSLDKQQVAFSE EAQLSSEGQRSFADGPPSPPKLQLQTPPPPPPPPQLTIRPLQHHAPLCWSLFRPQGRPPPPPPPQLPPPRIQSTDNNVTSIPSEPTAIDSSSKQGPSPPP PPPPPCSTPSSSFLTPPPPPPPSLPLLFTPPPPRRRHFYLYLLPLRHRLLHRRHHHLHHHYFYLFLLLLGHRLRQCHRNRHHHHHLPPKLIVSSGRHLLH HHHLPPKPIVSSRHLLHHHHLPLKPIVSSRRHLLHHHHLPLKPIVSSRRHLPPAPLSRTSLVSSPAPPPPPPAPRPPAPPPVPGRAGPPPLPGTNRASVP PPPPPGIGRARTTSVPSGPARGRGTASSGGVSKRTSLKPLHWVKVTRAVQGSMWADSQKQENKSRAPDIDISELESLFSAVSASEGSTASKIGGRRGSNI NKPEKVQLVDLRRAYNCEIMLSKVKMPLPEMINAILALDSSTLDIDQVENLIKFCPTKEEMETLKNFTGDKERLGKCEQFFMELMTVPRVEAKLRVFAFR ITFSSQVNDLRCNLNTVNDAAREVKESEKLRQIMQTILTLGNALNQGTARGSAVGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMPTLLDFGKDLIH LEAASKIQLKTLAEEMQAVSKGLEKVEQELAASENDGAISAGFQKASQIECSSMNTLEVEIFKFKCWASVKCMYLSQVLKNFLLTAEAEVRSLISLYSEV GRNADALSQYFGEDPARCPFEQVTQILVVFVKMFNKSRDENEKQADAEKKKLEKEALKEKSVAKKDDNDKLKLGFQIQRHAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31810		AFH14	Formin Homology 14 (.1)		Lus10003956 [exp]	0	1
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10002879 [exp]	4.1	0.8803
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10033961 [exp]	16.6	0.8696
AT3G13330		PA200	proteasome activating protein ...		Lus10008354 [exp]	17.9	0.8665
AT4G02680		EOL1	ETO1-like 1 (.1)		Lus10022084 [exp]	18.5	0.8378
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Lus10039707 [exp]	18.7	0.8733
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Lus10030445 [exp]	19.3	0.8453
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Lus10011195 [exp]	29.1	0.8510
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Lus10018496 [exp]	29.2	0.8641
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Lus10026261 [exp]	31.2	0.8535
AT3G13330		PA200	proteasome activating protein ...		Lus10027111 [exp]	33.7	0.8570

Compare expression of checked genes

Lus10003956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.