Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64200 213 / 2e-68 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) AT5G18810 75 / 8e-16 SCL28, At-SCL28 SC35-like splicing factor 28 (.1) AT3G13570 69 / 2e-13 SCL30A, At-SCL30A SC35-like splicing factor 30A (.1) AT1G55310 68 / 2e-13 ATSCL33, SR33, At-SCL33 SC35-like splicing factor 33 (.1.2.3) AT3G10400 66 / 1e-12 U11/U12-31K U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) AT5G06210 62 / 4e-12 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT4G13860 61 / 6e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G46020 59 / 4e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G73530 61 / 5e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G61030 62 / 7e-11 GR-RBP3 glycine-rich RNA-binding protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023802 [exp] 228 / 8e-74 AT5G64200 217 / 1e-68 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Lus10029426 [exp] 66 / 3e-12 AT5G27720 190 / 2e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Lus10002699 [exp] 65 / 6e-12 AT3G55460 138 / 3e-39 SC35-like splicing factor 30 (.1) Lus10000953 [exp] 65 / 1e-11 AT2G39670 588 / 0.0 Radical SAM superfamily protein (.1.2) Lus10003593 [exp] 64 / 2e-11 AT5G54580 174 / 6e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10017852 [exp] 63 / 2e-11 AT5G61030 178 / 7e-55 glycine-rich RNA-binding protein 3 (.1) Lus10034685 [exp] 63 / 2e-11 AT5G61030 177 / 7e-54 glycine-rich RNA-binding protein 3 (.1) Lus10014802 [exp] 63 / 3e-11 AT5G54580 176 / 2e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10026344 [exp] 60 / 4e-11 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G023800 [exp] 213 / 9e-69 AT5G64200 207 / 4e-66 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.002G095800 [exp] 206 / 2e-66 AT5G64200 204 / 5e-65 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.005G165400 [exp] 205 / 3e-65 AT5G64200 202 / 2e-63 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.010G026100 [exp] 74 / 2e-15 AT5G18810 172 / 2e-53 SC35-like splicing factor 28 (.1) Potri.006G197000 [exp] 71 / 1e-14 AT1G55310 187 / 8e-59 SC35-like splicing factor 33 (.1.2.3) Potri.001G006400 [exp] 71 / 2e-14 AT3G13570 170 / 3e-52 SC35-like splicing factor 30A (.1) Potri.003G218600 [exp] 71 / 2e-14 AT3G13570 177 / 7e-55 SC35-like splicing factor 30A (.1) Potri.008G196700 [exp] 71 / 3e-14 AT5G18810 168 / 8e-52 SC35-like splicing factor 28 (.1) Potri.012G061600 [exp] 70 / 5e-14 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.012G038200 [exp] 67 / 1e-13 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10003957 pacid=23157471 polypeptide=Lus10003957 locus=Lus10003957.g ID=Lus10003957.BGIv1.0 annot-version=v1.0 ATGTCTCACTTTGGAAGATCAGGCCCGCCTGACATCGCCGATACTTACTCGCTTCTCGTCCTCAACATCACTTTCCGTACTACTGCTGATGATCTTTTCC CTCTCTTCGACAAGTATGGCAAGGTCGTTGATATATTTATTCCCAGAGATCGAAGGACTGGTGACTCTCGTGGGTTTGCATTTGTACGGTACAAATATGC AGATGAAGCACAGAAGGCTGTGGAAAGGCTGGATGGAAGAGTTGTTGATGGTCGTGAGATTACAGTACAGTTTGCCAAATATGGACCTAATGCTGAGAAG ATTCAGAAAGGAAGGATCATAGAACCAGTTTCAAGATCAAGAAATGGGTCCAGGAGTCGCAGTCCTCGCCGGAAGCACCGAGATGAATCATACAGGGATA AGGATTACCGGAGGAGAAGCCGGAGCAGGAGTTTGGACAGACAAGAACGTGACAGATACCGCAGCAAAGACAGAGACTACCGCAGGCGAAGCAGGAGCCA CAGCCTCAGTCCTGATTATGCCAGAGGCAGGGGAAGAGGCCATTTTGATAATAAGCATCGAAGTACCAGTCGGTCAATCAGTCGATCACCACGTAAGCGT TCTCCAGTTCCCCGTAGGAGTCTTTCCCCACTGAGGGTCTCTCCAAAGGACGAAATCATAGACAGACGTGACCAACGTGCCCGCTCTCCAAGTCCACGGA CTACTTCCGTGCAGGATCGCGTTGTAGCATCCCATAGCGCATCTCCAAGGAATTCCGATGCTGAGGTCAGTGGATGA
AA sequence Show only first row Show all	>Lus10003957 pacid=23157471 polypeptide=Lus10003957 locus=Lus10003957.g ID=Lus10003957.BGIv1.0 annot-version=v1.0 MSHFGRSGPPDIADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVERLDGRVVDGREITVQFAKYGPNAEK IQKGRIIEPVSRSRNGSRSRSPRRKHRDESYRDKDYRRRSRSRSLDRQERDRYRSKDRDYRRRSRSHSLSPDYARGRGRGHFDNKHRSTSRSISRSPRKR SPVPRRSLSPLRVSPKDEIIDRRDQRARSPSPRTTSVQDRVVASHSASPRNSDAEVSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64200		ATSC35, At-SC35	ARABIDOPSIS THALIANA ORTHOLOG ...		Lus10003957 [exp]	0	1
AT5G22220	E2F_DP	ATE2FB, E2F1	E2F transcription factor 1 (.2...		Lus10013321 [exp]	4.2	0.8489
					Lus10033992 [exp]	4.9	0.8278
AT5G45590			Ribosomal protein L35 (.1)		Lus10010409 [exp]	10.2	0.8528
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Lus10032940 [exp]	15.4	0.7746
AT3G58530			RNI-like superfamily protein (...		Lus10012294 [exp]	29.0	0.8464
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10010323 [exp]	39.3	0.8215
AT3G22430			unknown protein		Lus10006278 [exp]	45.5	0.7534
AT3G04680		CLPS3	CLP-similar protein 3 (.1.2)		Lus10007269 [exp]	49.6	0.7595
AT4G04980			unknown protein		Lus10011209 [exp]	50.1	0.8175
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031799 [exp]	52.8	0.7790

Compare expression of checked genes

Lus10003957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.