Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15190 118 / 8e-31 Fasciclin-like arabinogalactan family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023801 [exp] 563 / 0 AT1G15190 125 / 1e-33 Fasciclin-like arabinogalactan family protein (.1) Lus10015081 [exp] 137 / 2e-37 AT1G15190 108 / 4e-28 Fasciclin-like arabinogalactan family protein (.1) Lus10023183 [exp] 85 / 8e-19 AT1G15190 67 / 3e-13 Fasciclin-like arabinogalactan family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G306800 [exp] 72 / 5e-14 AT1G15190 52 / 8e-08 Fasciclin-like arabinogalactan family protein (.1) Potri.019G002300 [exp] 61 / 3e-10 AT1G15190 93 / 3e-22 Fasciclin-like arabinogalactan family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003958 pacid=23157476 polypeptide=Lus10003958 locus=Lus10003958.g ID=Lus10003958.BGIv1.0 annot-version=v1.0 ATGAAGAAGAAACTGTTTCTTGATATTCCGATCATCTTCATCCTCATCATCGCCGCCACCACCACAATCCCTACTCCGGCGACTTCCATTCCTACTGATT CACTGGACTACGTCCTCTACTTCCTCCGCAGCCGCGGCCACTCACTCTTCGCCAATGCGATCGCCACTTCCGATCTCCTATTCGACGTCCTCGCTCTCCC TTCCGTCACAATCTTGCCTCCATCAGATCCAGCCCTATTCGCCATGGACATGACGGAGTTACCTTCCTTCTACCTCGCTGTTCTCCGCATCCACGTCATT CCTTTCCGCATCGACCTCCGCTACCTCCAGAACAACGCTTCTCTACATACTCTGGTCCCCTCTCGCCGCCTCCACGCCACCAGAAGCCCTGACAATCTCC GACTTGACGGCGTCCAAGTCCTCTTTCCTTCTCTTTACGACTCCAACAACGTCGCCGTATTTGCTCTCCATGGTATGCTCCCTTCGCGCGTCCCACGGCA ACGGAATCGAACGGTTATTCCTCCGGTTCCTAGTGCTACGAATTTCTCGTCTCCGGAAGTAGCGGGCAACAGCAGCTCGGCAGTTCTTTCTCCGCCAATA TTATCAGCACCGGATAACTTTTCGGTTCTTGAATTTCCTCACAATCAGACTGTTCATCATCATCGTCATCATCATCATCGCCGGCATCGTCCGATCAATT ACAGATCCCCTGCTCTTCCTCCGAATGACCAGAGCTCCACGATCTCGGTTTCACCTTCGACCAAGGCGGCCGACACCGTTTCTTTCAGTCCGGCGATTTC AGGGTACTACCAGCAGACTCCAGCATTTCCTCCAATTACGACGGCGGAGATGAGTTTGCCTCCCGTCGTTGGCAGCCTATTTCTTCCTCCTGACCAGAAA CACAGTTTTGAACCGATCTCAGGTCCATCTCCACAGGATCTCTCGGTTTCCCTCACTCCTATTCTGACGCCGTCCGTGAGTCCACCAGTTGATCTGACAG ATCCGGCACCTGCGGACATTGACTTTGACGATAATGTGTCAGAGTGGGTAGCAAGCGTCGATGCTCCTCCGTCCGGCAACGACTATGGGGCGACGAAGAA GGATGAAGGGAATTGGGAAGGAGGGCCAGCCGGGGAGCTACCAGAGTATGCATCCGAAAAAGCAGAGCAGGGACACGTCAACAACCGAGAGGATTATTTC TTGATGGATCCAAGCGAGATGTGA
AA sequence Show only first row Show all	>Lus10003958 pacid=23157476 polypeptide=Lus10003958 locus=Lus10003958.g ID=Lus10003958.BGIv1.0 annot-version=v1.0 MKKKLFLDIPIIFILIIAATTTIPTPATSIPTDSLDYVLYFLRSRGHSLFANAIATSDLLFDVLALPSVTILPPSDPALFAMDMTELPSFYLAVLRIHVI PFRIDLRYLQNNASLHTLVPSRRLHATRSPDNLRLDGVQVLFPSLYDSNNVAVFALHGMLPSRVPRQRNRTVIPPVPSATNFSSPEVAGNSSSAVLSPPI LSAPDNFSVLEFPHNQTVHHHRHHHHRRHRPINYRSPALPPNDQSSTISVSPSTKAADTVSFSPAISGYYQQTPAFPPITTAEMSLPPVVGSLFLPPDQK HSFEPISGPSPQDLSVSLTPILTPSVSPPVDLTDPAPADIDFDDNVSEWVASVDAPPSGNDYGATKKDEGNWEGGPAGELPEYASEKAEQGHVNNREDYF LMDPSEM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15190			Fasciclin-like arabinogalactan...		Lus10003958 [exp]	0	1
AT5G59340	HD	WOX2	WUSCHEL related homeobox 2 (.1...		Lus10016569 [exp]	2.0	0.9059
AT5G38200			Class I glutamine amidotransfe...		Lus10035996 [exp]	5.1	0.8811
AT1G15190			Fasciclin-like arabinogalactan...		Lus10023801 [exp]	5.7	0.8598
AT2G23790			Protein of unknown function (D...		Lus10022496 [exp]	10.8	0.9077
AT3G16150		ASPGB1	asparaginase B1, N-terminal nu...		Lus10024795 [exp]	11.4	0.8639
					Lus10039453 [exp]	12.6	0.8603
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10010747 [exp]	14.4	0.9003
AT3G53630			unknown protein		Lus10025312 [exp]	15.7	0.8962
					Lus10031880 [exp]	19.2	0.8850
					Lus10030648 [exp]	20.0	0.8236

Compare expression of checked genes

Lus10003958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.