Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15200 290 / 3e-94 protein-protein interaction regulator family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023800 [exp] 562 / 0 AT1G15200 399 / 7e-137 protein-protein interaction regulator family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G208200 [exp] 345 / 1e-115 AT1G15200 314 / 1e-103 protein-protein interaction regulator family protein (.1.2.3.4) Potri.003G021900 [exp] 275 / 8e-89 AT1G15200 290 / 6e-95 protein-protein interaction regulator family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04696 [flax] [poplar] Pinin_SDK_memA pinin/SDK/memA/ protein conserved region
Representative CDS sequence Show only first row Show all	>Lus10003959 pacid=23157482 polypeptide=Lus10003959 locus=Lus10003959.g ID=Lus10003959.BGIv1.0 annot-version=v1.0 ATGAACGCATCAGCTGCTGTGGCGGAGAAGACTGAGGAAGAGCTACGCAAGGAGATCGATGAGCTCCATCGACAGCAGCGCCAGATTACTGAGCGGTTAC GTGATCCTAGAGGCATCCGACGCGGAAATCTTCCCGCTGGCGGACCGAGGAACTTCGCCTCTAATGGCGCACCTCACAGAGGGTTTGTTCGCCCAGCTGA CCGGAATGACAATGGGGATCAACCTCCGGCAAAGAAACGGCTTCTCTCTGCTGTTTTCAAGGTTGAGGATGGAGAGATAGTTGAGGACGATGTGAAGAAT CAGGTTACTGAGGATAGATCTGATGTTGCTGCGATTAGTAATCAAGACGAACTAAAGCTGCCAAGTATACGTCCGAGTAGTCAGTCTTGGAACCAACGAC CACGAACAAGAGAGTCTGACATTCCTGCTGATAACCATATGCCGAGGGTGTTGCCCAAGAACGAGGACCCAAGTTTGGTTAGCAGAAACAAGAGGATGTT GGGGCAACTTCTAGGTACCTTGGAGAAATTCAGAAAAGAGGATATAAAGCTCTCAGGGACTGAGGCATACACAAAAAGGTCAAATGCTTTGCAAAAGGCT GAGCAAAGAGCACGTGAAGAAAGCGAAAGGCTGAGACAGGAGGAGCGTGAAAAATTAGCCGAAAAAAGGAGGAGGGATCTGGTTCTGAGGGCCAGAGTTG CTGCGAAGGCAGAAGAAAAGAAGTTGGAATTACTGTTCCTTCGTTGGACTGAGCATCAGAAAAAGCTGTCCAGTTTTATAAGGCAGTTTGATTCATTGTG GTATGATCGTTATGGATTTTTCAGGACCAAGACAGAGCCTCCAATATATTATATGCCAAAGAAACCACTGGATGAAGATGAAAACCTGCAACAGCAGCGC AGTGAACAGTTATTAGCAGAATGGAAGGCCGGGAGAAGAGAGGAAGTGTCGGAGTATCAGAAGCAGATAGAGGTGCAGTACCTTGAAAATGTTGAGAAAG AGGTAGAGAGGTGGAATAATAATGCAAGGAATGGTAGAAAAGGTAACAAGGATGTAAACTTACAAGAGACGATGGACCAAGAGCTGGAGAGCCATAGACT TGAGCACGGTCCAAAAAGGAAAAAGATACAAGGTGGTAGTGATGGTGAAGAAGAAGATGAGGTGGAGGATATCAACGTCGGTGAGGATGATAATGACATG ATGGACGACGTGCTAGTCGTCGGTGTGGAAAAGGGTTTCAAAGTTGACGACGACGATGATGATGTAGTAACAAACGCACAAAATGGCAACGAGATTGGCA CCGAGATTACTCATGATGATGTGGTTAAGCAGCAATTGGAATGA
AA sequence Show only first row Show all	>Lus10003959 pacid=23157482 polypeptide=Lus10003959 locus=Lus10003959.g ID=Lus10003959.BGIv1.0 annot-version=v1.0 MNASAAVAEKTEEELRKEIDELHRQQRQITERLRDPRGIRRGNLPAGGPRNFASNGAPHRGFVRPADRNDNGDQPPAKKRLLSAVFKVEDGEIVEDDVKN QVTEDRSDVAAISNQDELKLPSIRPSSQSWNQRPRTRESDIPADNHMPRVLPKNEDPSLVSRNKRMLGQLLGTLEKFRKEDIKLSGTEAYTKRSNALQKA EQRAREESERLRQEEREKLAEKRRRDLVLRARVAAKAEEKKLELLFLRWTEHQKKLSSFIRQFDSLWYDRYGFFRTKTEPPIYYMPKKPLDEDENLQQQR SEQLLAEWKAGRREEVSEYQKQIEVQYLENVEKEVERWNNNARNGRKGNKDVNLQETMDQELESHRLEHGPKRKKIQGGSDGEEEDEVEDINVGEDDNDM MDDVLVVGVEKGFKVDDDDDDVVTNAQNGNEIGTEITHDDVVKQQLE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15200			protein-protein interaction re...		Lus10003959 [exp]	0	1
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10000285 [exp]	2.2	0.9208
AT1G50680	AP2_ERF		AP2/B3 transcription factor fa...		Lus10036282 [exp]	2.6	0.9108
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10014928 [exp]	4.2	0.9279
AT1G16670			Protein kinase superfamily pro...		Lus10042851 [exp]	6.5	0.9270
AT5G51020		CAA33, CRL	constitutive activator of AAA-...		Lus10032529 [exp]	6.6	0.9211
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10020245 [exp]	6.9	0.9288
AT4G33060			Cyclophilin-like peptidyl-prol...		Lus10026441 [exp]	10.2	0.9026
AT5G12230		MED19A	unknown protein		Lus10008738 [exp]	10.9	0.8764
AT5G37290			ARM repeat superfamily protein...		Lus10008435 [exp]	11.2	0.9081
AT5G57500			Galactosyltransferase family p...		Lus10000407 [exp]	12.2	0.8866

Compare expression of checked genes

Lus10003959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.