Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15570 936 / 0 MAA3 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G16800 235 / 6e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 233 / 1e-63 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30100 228 / 7e-62 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37030 160 / 7e-41 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G65810 154 / 3e-38 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G47010 152 / 2e-37 ATUPF1, UPF1, LBA1 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) AT5G37160 144 / 3e-35 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G05540 141 / 2e-34 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52090 138 / 1e-33 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038906 [exp] 1261 / 0 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015030 [exp] 1258 / 0 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033462 [exp] 242 / 2e-66 AT4G30100 1589 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035717 [exp] 229 / 6e-62 AT1G16800 1196 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037303 [exp] 222 / 1e-59 AT1G16800 1190 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035776 [exp] 156 / 2e-38 AT1G65810 633 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035775 [exp] 153 / 7e-38 AT5G37150 561 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003024 [exp] 153 / 8e-38 AT5G47010 2045 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10037353 [exp] 152 / 2e-37 AT1G65810 543 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G056700 [exp] 1082 / 0 AT4G15570 1058 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G168300 [exp] 228 / 6e-62 AT4G30100 1620 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G093500 [exp] 228 / 7e-62 AT4G30100 1637 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G253700 [exp] 220 / 4e-59 AT1G16800 1405 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G077500 [exp] 159 / 7e-40 AT1G65810 827 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G140501 [exp] 158 / 2e-39 AT1G65780 798 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G077600 [exp] 157 / 4e-39 AT1G65810 843 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143450 [exp] 157 / 1e-38 AT1G65810 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G140601 [exp] 155 / 1e-38 AT1G65780 777 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G140300 [exp] 153 / 3e-38 AT1G65780 572 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003960 pacid=23157491 polypeptide=Lus10003960 locus=Lus10003960.g ID=Lus10003960.BGIv1.0 annot-version=v1.0 ATGCGATTTGGAGACGGCGGCAGTTGGAAAAGGATCCATGGCAATTCAGTCGCATGCGAAGATGTATTCGTTAACCCGCCGTCGAAGAAGCGTTTCGGTA CGATTGCTGCGTGTTCCAACCCGTTCGGTGGAGATTTCGGTCCCAAGGAGAAGATTCAAGAGGAAGTCTCCTTCAATCGTTTCTGCAAAATCGTCCTTGT TTGGGATCATGTTCGCCTTCACGCAGGAGCTGATGACAATACGGAGAAGAACAAGAGTGACAATAATTTAAGAGAAGTTAAAAATACCTACAAAGACGTT GATGATTACCTCTCCACATTTGAGCCCCTCTTGTTTGAAGAAGTGAAAGCCAATATTACTCGGAATAAAGATGATGAAGAAGTGACAAATTGTGAAACGA GCTTGATTATTGAGTGCGAGGTTATTGAATGCAATGAACTCGAAGGGTTTTTCCAGATTGCAGTTAATTATGAGGATAATGAGGACAACAAAATCTCCCA AAATGATCTGCTCCTCCTTTCCACGGAGAAGACCACAACATACGCATATGCTTTAGTTGAGCATACCCAATATAAATGTCTTAGACTTAGGATGTGTCTG GCTGGAGAAATCACGAATACACACTTAAATGAGCCAAGACTGTTAAACATGCAATCTCATATCACTACTCCTCCTGTGAAGCGACAAGAGAAGACCTTGT TCAAAAAGATATGCAGTTTGTCAACCATTTTGCGTGAATATATTGCTTTGCGGTCAATTGGGTCCCTTCCTTTCAAAGATTTAATACTGAAAGCCGCTGA CATATCTGATTCAGAAGACCAGGGTTGGAAAGTTTCTGAAGCTCTTCGTGGACATTTTGAAGGAACTCTTAACCCATCACAGATAGAAGCGGTAAATGCT GGTCTGTCACGTAAACGCTTTGTCCTGATACAGGGTCCTCCTGGAACAGGAAAAACACAAACAATTCTTGCACTACTCAGTGCTATTCTTCATGCCACTC CAGCTCGGCTGCACTTGAAGGCTGGCTCACATGCAACTAAATATGGACAACAACTTTCAGTTCAGTACAAGTATAACCATTGGGCTCGAGCATCTCCATG GTTGACTGGTATCAACCCCAGAGATGAGATTATGCCTAAAGGCGGTGATGATGGATTCTTTCCTACTACTGGAAGTGAGCTGAAACCAGAAATAGTTGCT TCAAGTCGACGCTATCGTCTAAGAGTACTTGTATGTGCTCCATCAAATTCTGCACTCGATGAGATAGTGTTGCGCCTTCTCAGAAATGGTGTTCTTGATG AAACTGTCAGTACATATAACCCCAAGATTGTGCGCATTGGTCTTAAAGCACATCACTCAGTTCAGTCAGTCTGCATGGATTACCTTGTAAGACAAAAACA AAATGAGTCGAATAAACAGAGGCAGGGAGCCGCTGGAGGGGACACAGATAATATCCGCTCTTCAATTCTTGATGAGGCTGTCATTGTTTTTTCCACTCTC AGCTTCAGTGGCTCGGCACTTTTCAGTAAACTGAATCATAGTTTTGATGTTGTGATTATTGATGAAGCTGCCCAAGCTGTCATATTAGAACTTGAATCAG TCGTGAAACGGTACATTCGATTGATCATCAAGGTAGAACCTGCTACTCTTGTTCCTTTATCCAATGGGTGCAAACAAGTGTTTCTGGTTGGTGATCCAGT TCAATTACCAGCCACTGTGATTTCTTCAACTGCTAGTAAATTTGGTTATGGCACTAGTTTGTTTGAGAGGTTTCAGAGAGCCGGATATCCTGTAAATATG CTGAAGATGCAGTACCGGATGCATCCAGAGATTAGAACCTTTCCTTCTAGTGAATTCTACAGCGAGGCTCTGGAGGATGCAATGGATATGGAGCAGAAGA CGAGAAGGGACTGGCATAAGTATCGCTGCTTTAACCCATTTTGTTTCTTCGACCTGCACGAAAGCCAAGAGTGGCAGCCCCCAAGAAGCGGGTCATATGT AAACACGGACGAGGTGGAATTCGTTCTTCTCCTATATGGAAAGTTGGTGTCTATGCGTCCAGAACTTCGATCAAGTTCAAAGTTTGCCATCATATCCCCA TATAGATACCAAGTGAAGCAGTTACAAGATCGATTCAAAGAAAATGTTGGCCAGGACTCTAGAGAGTTTGTCGATATTCAGACAGTTGATGGTTTCCAGG ATGTTGCGATCTTCTCGTGTATGAGGGCAAACGAAAGCAAAAGTATCGGGTTTGTATCCGATCCTCGGAGAATGAACGTCGGTATCACCCGTGCAAAGTC CACTGTTCTGGTTGTAGGGTCAGCAGCGACTTTGAAGCAAGACGAGCACTGGGCCAATCTGATCGAAAGTGCAGAGAGGAGAAATGTTCTTTTCAAGGTG TCTAAGCCGTACAGTTCGTTTTTCAGTGATTCTAACTTGGAAGCCATGACAGTTAAGGAGGAGGGTATGGAGGATGAAATAGTTGAGGAAGAACATGACT TGGACTTTGGTGGCAATTGCTACAAAATGCAAGTAGACGATGATTTTGATATTGATGATGCTGATGACGATGGTGGCAATGTCTGCTTGGATGACGTTTG A
AA sequence Show only first row Show all	>Lus10003960 pacid=23157491 polypeptide=Lus10003960 locus=Lus10003960.g ID=Lus10003960.BGIv1.0 annot-version=v1.0 MRFGDGGSWKRIHGNSVACEDVFVNPPSKKRFGTIAACSNPFGGDFGPKEKIQEEVSFNRFCKIVLVWDHVRLHAGADDNTEKNKSDNNLREVKNTYKDV DDYLSTFEPLLFEEVKANITRNKDDEEVTNCETSLIIECEVIECNELEGFFQIAVNYEDNEDNKISQNDLLLLSTEKTTTYAYALVEHTQYKCLRLRMCL AGEITNTHLNEPRLLNMQSHITTPPVKRQEKTLFKKICSLSTILREYIALRSIGSLPFKDLILKAADISDSEDQGWKVSEALRGHFEGTLNPSQIEAVNA GLSRKRFVLIQGPPGTGKTQTILALLSAILHATPARLHLKAGSHATKYGQQLSVQYKYNHWARASPWLTGINPRDEIMPKGGDDGFFPTTGSELKPEIVA SSRRYRLRVLVCAPSNSALDEIVLRLLRNGVLDETVSTYNPKIVRIGLKAHHSVQSVCMDYLVRQKQNESNKQRQGAAGGDTDNIRSSILDEAVIVFSTL SFSGSALFSKLNHSFDVVIIDEAAQAVILELESVVKRYIRLIIKVEPATLVPLSNGCKQVFLVGDPVQLPATVISSTASKFGYGTSLFERFQRAGYPVNM LKMQYRMHPEIRTFPSSEFYSEALEDAMDMEQKTRRDWHKYRCFNPFCFFDLHESQEWQPPRSGSYVNTDEVEFVLLLYGKLVSMRPELRSSSKFAIISP YRYQVKQLQDRFKENVGQDSREFVDIQTVDGFQDVAIFSCMRANESKSIGFVSDPRRMNVGITRAKSTVLVVGSAATLKQDEHWANLIESAERRNVLFKV SKPYSSFFSDSNLEAMTVKEEGMEDEIVEEEHDLDFGGNCYKMQVDDDFDIDDADDDGGNVCLDDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10003960 [exp]	0	1
AT2G20790			clathrin adaptor complexes med...		Lus10034013 [exp]	2.6	0.8876
AT1G79190			ARM repeat superfamily protein...		Lus10022448 [exp]	6.5	0.8808
AT5G35930			AMP-dependent synthetase and l...		Lus10009528 [exp]	6.8	0.8816
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016881 [exp]	8.5	0.8727
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10041229 [exp]	9.5	0.8688
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Lus10017623 [exp]	11.0	0.8508
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10032181 [exp]	12.8	0.8733
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10027630 [exp]	13.0	0.8698
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10036010 [exp]	13.4	0.8752
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10038081 [exp]	15.3	0.8609

Compare expression of checked genes

Lus10003960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.