Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09350 505 / 1e-180 Fes1A Fes1A (.1.2.3) AT3G53800 442 / 1e-155 Fes1B Fes1B (.1) AT5G02150 405 / 5e-142 Fes1C Fes1C (.1.2) AT3G51980 81 / 9e-17 ARM repeat superfamily protein (.1) AT1G01950 42 / 0.0006 AtKINUb, ARK2 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023786 [exp] 691 / 0 AT3G09350 522 / 0.0 Fes1A (.1.2.3) Lus10023269 [exp] 71 / 2e-13 AT3G51980 397 / 4e-137 ARM repeat superfamily protein (.1) Lus10038535 [exp] 70 / 5e-13 AT3G51980 404 / 1e-139 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G088000 [exp] 568 / 0 AT3G09350 516 / 0.0 Fes1A (.1.2.3) Potri.016G100500 [exp] 557 / 0 AT3G09350 472 / 3e-167 Fes1A (.1.2.3) Potri.001G072200 [exp] 72 / 6e-14 AT3G51980 414 / 5e-144 ARM repeat superfamily protein (.1) Potri.003G158701 [exp] 63 / 4e-11 AT3G51980 251 / 3e-82 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003961 pacid=23157459 polypeptide=Lus10003961 locus=Lus10003961.g ID=Lus10003961.BGIv1.0 annot-version=v1.0 ATGGCGAAGCCAGGGCCAGATTGGGATGGGTTGCTCAAGTGGAGTCTTTCTCACTCTGATGGGACTGGGACCAATCGGAACCTCAGCGAGGAGGATAAAA AATGGTTTATGGAGGCGATGCAAGCCCAGACTGTGGATGTGGTTAAGCGAATGAAAGAGATTACCCTGGTCATGCAAACCCCCGAGGATGTCCTGGAGTC TCAAGGAGTCACACCTGTTGAGATTGAAGATATGTTGGACGAGCTGCAAGAGCATGTAGAGTCCATTGACATGGCGAACGATCTTCATTCTATTGGCGGT TTGGTTCCTCTCCTGGGTTACCTTAAGAACTCACATGCCAACATTCGAGCCAAGGCTGCGGAGGTAGTGTCTACTATCGTCCAGAACAATCCCCGAAGTC AGCAACTGGTTATGGAAGCAAATGGGCTGGAGCCTCTCTTGTCTAATTTTGCTTCAGACCCAGATGTAACTGTACGAGCCAAGGCACTCGGTGCAATATC CTCCTTGGTCCGACACAATAAACCAGCTGTCGCTGCATTCCGCCTTGCGAACAGTTATTCTGCCCTGAAGGATGCTTTGAATTCTGATAATGTGAGATTT CAAAGGAAAGCCTTGCACGTGATTCATTACTTGTTGAAAGAGAACACCTCAGATTGCACTACTCTCAATGAGCTAGGGTTCCCACGCATATTGCTACATC TTGCCTCGAGCGATGATGGAGACATCCGGGAGTCTGCCCTTGGAGTCCTCCTCGAGCTTGCTCAGCACGATGTTGATTCCAAAGTTGGTAGATCAGCCGA TGAAGACGAGAAATTGAAGAGCCTTCTGGAAGAAAGGATAAATGGCATAAGCTTGATGTCACCTGAAGATCTAGGCGCAGCTAAAGAAGAGAGACTGCTA CTGGACGCTCTCTGGAAAACTTACTTCAACGAACCCTCATCTCTCCGAGAAAAGGGCCTCCTCGTGCTCCCTGGAGAAGATGCACCGCCACCTGATGTCG CTACTGAGCAATTCGAACCTCCTCTTCGAGCATTGGCCGCAAACCGGAACACCGCCTCCGAGAAGAAGCAGGCTCCTCTTTTATTGGGACCATGA
AA sequence Show only first row Show all	>Lus10003961 pacid=23157459 polypeptide=Lus10003961 locus=Lus10003961.g ID=Lus10003961.BGIv1.0 annot-version=v1.0 MAKPGPDWDGLLKWSLSHSDGTGTNRNLSEEDKKWFMEAMQAQTVDVVKRMKEITLVMQTPEDVLESQGVTPVEIEDMLDELQEHVESIDMANDLHSIGG LVPLLGYLKNSHANIRAKAAEVVSTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRAKALGAISSLVRHNKPAVAAFRLANSYSALKDALNSDNVRF QRKALHVIHYLLKENTSDCTTLNELGFPRILLHLASSDDGDIRESALGVLLELAQHDVDSKVGRSADEDEKLKSLLEERINGISLMSPEDLGAAKEERLL LDALWKTYFNEPSSLREKGLLVLPGEDAPPPDVATEQFEPPLRALAANRNTASEKKQAPLLLGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09350		Fes1A	Fes1A (.1.2.3)		Lus10003961 [exp]	0	1
AT1G66080			unknown protein		Lus10031356 [exp]	1.0	0.9433
AT5G35320			unknown protein		Lus10027608 [exp]	1.7	0.9176
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10009677 [exp]	2.8	0.9225
AT3G08970		TMS1, ATERDJ3A	THERMOSENSITIVE MALE STERILE 1...		Lus10002852 [exp]	3.3	0.8636
AT2G29900		PS2	Presenilin-2 (.1)		Lus10035137 [exp]	5.2	0.8721
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Lus10013364 [exp]	5.9	0.8948
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10009039 [exp]	6.3	0.9139
AT3G17880		ATHIP2, ATTDX	HSC-70 INTERACTING PROTEIN, AR...		Lus10031334 [exp]	8.8	0.8821
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10023018 [exp]	9.6	0.8357
AT2G20560			DNAJ heat shock family protein...		Lus10017687 [exp]	10.5	0.8687

Compare expression of checked genes

Lus10003961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.