Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04610 374 / 7e-127 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G31740 103 / 2e-23 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023784 [exp] 839 / 0 AT5G04610 389 / 2e-132 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016656 [exp] 115 / 4e-27 AT2G31740 895 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014472 [exp] 47 / 2e-05 AT4G13330 441 / 2e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10023725 [exp] 45 / 8e-05 AT4G13330 445 / 5e-155 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G234600 [exp] 465 / 4e-162 AT5G04610 397 / 1e-135 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G317700 [exp] 100 / 2e-22 AT2G31740 886 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G171900 [exp] 44 / 0.0002 AT4G13330 421 / 3e-145 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003963 pacid=23157475 polypeptide=Lus10003963 locus=Lus10003963.g ID=Lus10003963.BGIv1.0 annot-version=v1.0 ATGGCACTCGACGTGAAAGTCTTCGAATCAATAGCTCCGTCACGCTTCTTAACCTTCACGATTCCTAGGCCGGAACTCCGTTCCCGCCTACTCCGAGTCG CCGTCCTCGATTCTCCCTTCCCACCGCTTAGTGGATCCTACTCCGGTCAACAAGTGGCTGCTCTTTTCGTCCCTCTGAACTGCGAATCCGACTGGGTATT CTCCACCGAGTCCGGCCATCTCCAGCTCCTTCTCTCCTTCTCCGGTATCTCCCGCCTCATCCTGATCGGGAGAAACCCAGTCGACGAACCCGATTCGTCA ACTGACAAAAAAACCCAAGGTAACCAATATCTGGAAAATCTCCGGAGTATGTTGAAACCATTGTTAGAGGCTCTGTCCCCTAAGACTTCCGATAATGGAA TTGTTGATGTTCCCATATGGGAATATGTCGACAATGTGATTCATAGAAAGGTCTTGGAGAGAAGAGTCGGGGATTTGACTGGCGAAATGCTTGTTGAGGA TGTCGAGGTGCAGACTGAGAATCATACTTCTGAGGAGAATGTTGGGAGAAGTAGCGAATTTAGGAGGCGATTGAGGTTTAAGAGAATGCCAAACTTGGTT CAGACGGAAATTAGGCTCACTCCTGAAGATGTCAAGTTTAAACCTGAGCTTGGGGTCCTCGTCCAACCTTACTTGGTGGCCATGGTGGCTAGCCTTTCCT TGATTGTTGATTGTATCGGAACAAGAATTCGAAATGGTGTCAAGTCTAAAGCTTTGTGTTTGGGAGTCGGTGGTGGGGCTTTGCCAAGTTTTATGAGATC CCAATTGGGGTTTCAGGTTTGTGGAGTGGAGATGGATGAGGAGGTTTTAGGGATTGCCATGCAATATTTTGGTCTTGATATCTCTCAAGTCAACGTCCAT ATTGACAATGCCTTAGACTTTGTGGACAAACTGGCTGGTCGAGGAAGTGACTGTAAGGAAGATTGTTGCTGTACCGTTGAATGCAGCTTTGATGTCATTA TGGTTGATCTCGATTCCTCAGATGCAAGAAACGGTATCAGTGCTCCACCGGTGGAATTCATTGACAGAGATATCGTGTCGGCTGCGAGATTGATTCTTGC AGACCATGGGATTCTGGTAATGAATGTCGTTCCTTCAATCAGGTTGTCCTATGACAACTTGATAGAGCAATGCAGGGGAGTGTTCAGTGAGCTGTATGAA ATCGATGTTGGGAATGGAGAGAACTTCATTCTTGTTGCAAAAAAGTCTCCTCTTCTGTCAACAGCTGGCGATTCCGGCAACTACTTCAGTGATAAACTCA AGGACTTGATATCAAGGAAATACATGGACTCCATCAGGAAAATTTGA
AA sequence Show only first row Show all	>Lus10003963 pacid=23157475 polypeptide=Lus10003963 locus=Lus10003963.g ID=Lus10003963.BGIv1.0 annot-version=v1.0 MALDVKVFESIAPSRFLTFTIPRPELRSRLLRVAVLDSPFPPLSGSYSGQQVAALFVPLNCESDWVFSTESGHLQLLLSFSGISRLILIGRNPVDEPDSS TDKKTQGNQYLENLRSMLKPLLEALSPKTSDNGIVDVPIWEYVDNVIHRKVLERRVGDLTGEMLVEDVEVQTENHTSEENVGRSSEFRRRLRFKRMPNLV QTEIRLTPEDVKFKPELGVLVQPYLVAMVASLSLIVDCIGTRIRNGVKSKALCLGVGGGALPSFMRSQLGFQVCGVEMDEEVLGIAMQYFGLDISQVNVH IDNALDFVDKLAGRGSDCKEDCCCTVECSFDVIMVDLDSSDARNGISAPPVEFIDRDIVSAARLILADHGILVMNVVPSIRLSYDNLIEQCRGVFSELYE IDVGNGENFILVAKKSPLLSTAGDSGNYFSDKLKDLISRKYMDSIRKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04610			S-adenosyl-L-methionine-depend...		Lus10003963 [exp]	0	1
AT3G12590			unknown protein		Lus10001698 [exp]	2.2	0.8515
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Lus10024394 [exp]	9.5	0.8389
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Lus10011568 [exp]	13.4	0.8299
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10043456 [exp]	13.9	0.8398
AT3G12940			2-oxoglutarate (2OG) and Fe(II...		Lus10027382 [exp]	15.3	0.7890
AT5G61400			Pentatricopeptide repeat (PPR)...		Lus10015717 [exp]	15.3	0.8079
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10033838 [exp]	17.0	0.8090
AT1G04390			BTB/POZ domain-containing prot...		Lus10027380 [exp]	18.1	0.8197
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Lus10023437 [exp]	20.2	0.8197
AT2G16880			Pentatricopeptide repeat (PPR)...		Lus10041421 [exp]	21.4	0.7943

Compare expression of checked genes

Lus10003963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.