Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02130 405 / 3e-139 NDP1 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024371 [exp] 570 / 0 AT5G02130 400 / 1e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023783 [exp] 539 / 0 AT5G02130 294 / 2e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000114 [exp] 538 / 0 AT5G02130 241 / 2e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010858 [exp] 433 / 1e-150 AT5G02130 289 / 1e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G091400 [exp] 502 / 5e-177 AT5G02130 405 / 2e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003964 pacid=23157481 polypeptide=Lus10003964 locus=Lus10003964.g ID=Lus10003964.BGIv1.0 annot-version=v1.0 ATGATACGTTCAGCACTCAAGCTGTCCCGATCAGCAACCGCCGTAGCCAAGACGGCGCGTTCTGAATTCAACTCCCTGAACCCAGCAATTCCCGGCCCAT CGTCGGCGGCAGCACGAACGCCGTTAAGATTGCTACATGGGGAAATGAACGGTCCGAATGCCAACCCGGTTGCTCTACAGATGATCGATTACGCTCTTTC CCTTCCAAGGTCTCAGAAGTCAGATGAGTCGTATGGGCAAGCCATGCTGGTACTAGAGCAGTGCCTTGCTTCTCAGTCTAGTGATGTTGAAGATGCTGTG TCCGAGAATTCTAAGGGGATGGTCCTACTCGCCATGGCCAATCTTTCGTTTGAAAGAGGAAATTTCAACGAAGCTTTGGAACAGCTGCAGAAAGTTAGTG AGTTGGACAAAGCAACTTTAGGGGTTAAAGGTTCTGCAATGGAAGCTCTTGCCGGGCTGAACTTGGAGCTGGGGAATGATGCTGCTTCATCAGTTATCGC AGATAAATGGTTACAACTCTTGGAGAATGAAAAATCAGCTAATAGCGGTGCTAGTTTTGAGGTAGCAACCGCTCGCGCTAAAGGGATCAAAGGTTTTGTT GAGCTTGTCTGCTGCAATGTTCAAGCAGCTGAGTTGCTGTTTGAAGGATTACAGGGCAACAATTACTGTGTTGGCTCTGCCGCTTTGTCGTATGGAGAAT TCTTGCATGCCACCCGCAATTTCTCAAAGGCAAAGGAATTATATCAGAAGGTAACTGAAGTAGTACCTGAGAACAAAGGTCTCACCGACATCAATGCCTT ATCAGCTTGCAACATGGCCTTGGATCAAGTTCAGTTAGCCGCTACATGTGCGCTAGGTCAGCTTGAAGCACACATGGGGAAATTTGGGGATGCGGAAGAA ACATTAACCAAGGCACTGAACAAAGCAGAGTTGCTCTATGGCCCTCATCACCCTAAAGTTGGACTAGTCTTGACCTGTTTGGCCCTCATGCTCCGGCAGA AAGCAATACAAGAACGCTCGAGTTCTCTCTTAATGCAGGAGGGACTCTTTAGAAGGGCAATAGAATTGCTGAAAGCTCCATCAGTAGAATCTGAAGGTGA TGAAAAAATGGGATCCTGGAGGGACATTGCAGCTCTTGCTAGAGCCGGCTATGCGGAAGCACTCTGCGTTCAAGAGAAGAGGAAGAGTGAAGGAGAGAAG ATGAGAAGTTGGGCAGAAGCTCAATGGAGAAACAGCAGATTATCGCTTGCTGAGGCACTGAGAATCTCAGAATCCTCCGATAGAGTTCTGGTGATTGATG CTCGGACTGGTAGAGCTCTGTGA
AA sequence Show only first row Show all	>Lus10003964 pacid=23157481 polypeptide=Lus10003964 locus=Lus10003964.g ID=Lus10003964.BGIv1.0 annot-version=v1.0 MIRSALKLSRSATAVAKTARSEFNSLNPAIPGPSSAAARTPLRLLHGEMNGPNANPVALQMIDYALSLPRSQKSDESYGQAMLVLEQCLASQSSDVEDAV SENSKGMVLLAMANLSFERGNFNEALEQLQKVSELDKATLGVKGSAMEALAGLNLELGNDAASSVIADKWLQLLENEKSANSGASFEVATARAKGIKGFV ELVCCNVQAAELLFEGLQGNNYCVGSAALSYGEFLHATRNFSKAKELYQKVTEVVPENKGLTDINALSACNMALDQVQLAATCALGQLEAHMGKFGDAEE TLTKALNKAELLYGPHHPKVGLVLTCLALMLRQKAIQERSSSLLMQEGLFRRAIELLKAPSVESEGDEKMGSWRDIAALARAGYAEALCVQEKRKSEGEK MRSWAEAQWRNSRLSLAEALRISESSDRVLVIDARTGRAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10003964 [exp]	0	1
AT2G34750			RNA polymerase I specific tran...		Lus10005693 [exp]	3.2	0.8884
AT1G18680			HNH endonuclease domain-contai...		Lus10003480 [exp]	3.3	0.8980
AT3G06920			Tetratricopeptide repeat (TPR)...		Lus10034167 [exp]	6.0	0.8514
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10028312 [exp]	11.9	0.8286
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10002703 [exp]	13.1	0.8804
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10009398 [exp]	17.3	0.8714
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006018 [exp]	24.8	0.8758
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10015179 [exp]	29.2	0.8508
AT5G60550		ATSNAK1, GRIK2	geminivirus rep interacting ki...		Lus10041298 [exp]	30.0	0.8539
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Lus10004922 [exp]	30.4	0.8666

Compare expression of checked genes

Lus10003964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.