Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37680 374 / 1e-128 PAT3, FRY1, FHY1 unknown protein AT5G02110 110 / 3e-26 CYCD7;1 CYCLIN D7;1 (.1) AT1G70210 98 / 4e-22 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT2G22490 94 / 1e-20 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT5G65420 91 / 4e-20 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT5G10440 90 / 9e-20 CYCD4;2 cyclin d4;2 (.1) AT3G50070 87 / 3e-18 CYCD3;3 CYCLIN D3;3 (.1) AT4G34160 83 / 7e-17 CYCD3;1 CYCLIN D3;1 (.1) AT5G67260 79 / 2e-15 CYCD3;2 CYCLIN D3;2 (.1) AT4G37630 65 / 3e-11 CYCD5;1 cyclin d5;1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023781 [exp] 939 / 0 AT2G37680 352 / 9e-120 unknown protein Lus10029194 [exp] 102 / 1e-23 AT1G70210 367 / 2e-127 CYCLIN D1;1 (.1) Lus10010709 [exp] 99 / 1e-22 AT1G70210 375 / 4e-130 CYCLIN D1;1 (.1) Lus10019825 [exp] 87 / 4e-18 AT4G34160 332 / 4e-112 CYCLIN D3;1 (.1) Lus10014089 [exp] 87 / 5e-18 AT4G34160 332 / 2e-112 CYCLIN D3;1 (.1) Lus10011507 [exp] 77 / 6e-15 AT5G67260 343 / 7e-117 CYCLIN D3;2 (.1) Lus10024796 [exp] 76 / 1e-14 AT4G34160 231 / 4e-73 CYCLIN D3;1 (.1) Lus10019317 [exp] 74 / 4e-14 AT5G67260 338 / 4e-115 CYCLIN D3;2 (.1) Lus10027874 [exp] 75 / 5e-14 AT4G34160 226 / 6e-70 CYCLIN D3;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G100600 [exp] 383 / 8e-132 AT2G37680 353 / 2e-125 unknown protein Potri.006G088300 [exp] 190 / 2e-55 AT5G02110 165 / 4e-48 CYCLIN D7;1 (.1) Potri.002G103500 [exp] 97 / 6e-22 AT2G22490 262 / 3e-85 Cyclin D2;1 (.1.2) Potri.005G157800 [exp] 96 / 1e-21 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.007G048300 [exp] 96 / 4e-21 AT5G67260 355 / 2e-121 CYCLIN D3;2 (.1) Potri.014G023000 [exp] 89 / 7e-19 AT4G34160 287 / 2e-94 CYCLIN D3;1 (.1) Potri.002G119000 [exp] 86 / 2e-18 AT4G37630 119 / 4e-31 cyclin d5;1 (.1.2) Potri.005G141900 [exp] 87 / 3e-18 AT5G67260 327 / 2e-110 CYCLIN D3;2 (.1) Potri.008G146600 [exp] 86 / 3e-18 AT1G70210 370 / 3e-128 CYCLIN D1;1 (.1) Potri.002G123000 [exp] 85 / 1e-17 AT4G34160 280 / 1e-91 CYCLIN D3;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09783 [flax] [poplar] Vac_ImportDeg Vacuolar import and degradation protein CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10003966 pacid=23157490 polypeptide=Lus10003966 locus=Lus10003966.g ID=Lus10003966.BGIv1.0 annot-version=v1.0 ATGCCTGTCAGGGTGGTGGAGAGCTCTGCTCCTTCGCAAGTTTCAGGGCCGAATTTCAGGCACACATCGCCGCCAGCTTCTACACTGTTGAGCGTCGGGC AGGCCTTTTCTGGTACTCAGAATGTTTCCAGTCTACAAAAGGATGAGGCTTGGAGAGTTAACGTCCGGATTCAAGGATGTGACTTGGATCAGGGTTACCT CTGTGGCACCATGGAAGCTCTCAATGTTCCAATGGCGGATACACCGGTTGTAACTTTCTGGGAAGGAGAGATTGTTGATATCAGGAACTACACTTTCTTC ACTGGAAAATGGGAGGCACTGCCAGAAGATGATTTAAGGCACTGGACCAAGTTTCCATCTTTTGCACCGTTTCAGAGTCAAGTTGAAGCTGATGGCGGCA AATCTCTAGATTTGAGCAACTATCCGTACATATTCATGAGATGGAAGGAACAATACTTTGTGAATGTTGGGACTGACTGTGGGTTAACCATAGCTGGGTT TTACTATGTCTGCTTCTCCTGTGCTGATGGCTCCATCAATGGCTTCTATTACGACCCTAACAGCAGCCCCTTTCAGAAGCTGGAACTCAAACCTGCCAAT GAAGGAAGATCAGGTTTCAGTTTTTCATCCTATGAGTTACACCCTACTGCAACAGTAGCACCAACTGCTGCTGCTGCGAGTACTACTAGTACTAGTGCTT TTGGGAATGTGGGAAGTTGCAAAGAAGATTGTGAAGAGGCTCTGGCTACGTGGATAGTGAAGGAGGCTAGTTATATGCCTGAGCCATGCTATGTTGATTA CCTTCATCGCTCCACTAGTTTGTTGTTTGCTCGCACCAAAGCAACTCATTGGCTCCTCAAGTGTTGTAGTCGACTCAATCTCTCTGTTCCGGTACTCTTC AGTGCTTCAAATTATCTCGATCGATTCATGTCCATCCACCGAGGCCTTAAATGGGAAACTTGGATGGTTGAATTGGTGACGATGGCATGTCTATCTGTTG CTACCAAGTTTAACGAGACATCCTCAACTGCTCCTTCCTTGGATGACTTCCAGATGGACCATTGTTTCCAATACAACACAATCAAGCAGATGGAACTGTT AATGTTACAGTCACTCCAGTGGCGTCTCAGCTCCACAACTTGTCACTCTTACGCCGAGCTGCTAGTGATGAACATCACCAATTCCTCATCACTGAAACCA CAACTTCAGCACGACCTATTGGAAACAACCACTCGTTTCCTTGTAGCATCTCTGCTAGAGTGGAAGTTTCAGGAGTATCGTCCAAGTTCAGTAGCTATAT GTGCAGTATGGTGCAGCTTAGAAGAGTTGACGTCGTCGTTGAACCAAGATTACGATCTCAACGATGTTATTGTTCCTCTACTCTTGAAGCAGAGCATTCA CAAGGACGACGTGTTAAGATGCCGACAGGACATGATGATGATGATGATGACGACAATGGTGGATTGCTCTTCGCCAGGGAGCCCGGTGACGGTTCTTTCT AGAGATCGTGATCGACTTCTTGTTGACGATTCCCAAGTTGATATCTCCGTGTTTTACGGGAACATGGCGGCGGCGGTTAGTGGATGCAAACTGAGAAACA TGATAAAGAAGAAGAGGAAATGGGGGGATGATGTTTGA
AA sequence Show only first row Show all	>Lus10003966 pacid=23157490 polypeptide=Lus10003966 locus=Lus10003966.g ID=Lus10003966.BGIv1.0 annot-version=v1.0 MPVRVVESSAPSQVSGPNFRHTSPPASTLLSVGQAFSGTQNVSSLQKDEAWRVNVRIQGCDLDQGYLCGTMEALNVPMADTPVVTFWEGEIVDIRNYTFF TGKWEALPEDDLRHWTKFPSFAPFQSQVEADGGKSLDLSNYPYIFMRWKEQYFVNVGTDCGLTIAGFYYVCFSCADGSINGFYYDPNSSPFQKLELKPAN EGRSGFSFSSYELHPTATVAPTAAAASTTSTSAFGNVGSCKEDCEEALATWIVKEASYMPEPCYVDYLHRSTSLLFARTKATHWLLKCCSRLNLSVPVLF SASNYLDRFMSIHRGLKWETWMVELVTMACLSVATKFNETSSTAPSLDDFQMDHCFQYNTIKQMELLMLQSLQWRLSSTTCHSYAELLVMNITNSSSLKP QLQHDLLETTTRFLVASLLEWKFQEYRPSSVAICAVWCSLEELTSSLNQDYDLNDVIVPLLLKQSIHKDDVLRCRQDMMMMMMTTMVDCSSPGSPVTVLS RDRDRLLVDDSQVDISVFYGNMAAAVSGCKLRNMIKKKRKWGDDV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37680		PAT3, FRY1, FHY...	unknown protein		Lus10003966 [exp]	0	1
AT3G57000			nucleolar essential protein-re...		Lus10032053 [exp]	6.9	0.8458
AT2G26590		RPN13	regulatory particle non-ATPase...		Lus10040571 [exp]	9.8	0.8367
AT4G36720		HVA22K	HVA22-like protein K (.1)		Lus10010093 [exp]	10.4	0.8459
AT5G20060			alpha/beta-Hydrolases superfam...		Lus10043294 [exp]	10.5	0.8167
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Lus10007555 [exp]	12.2	0.8349
AT1G19980			cytomatrix protein-related (.1...		Lus10017215 [exp]	16.2	0.7919
AT1G13570			F-box/RNI-like superfamily pro...		Lus10029077 [exp]	17.1	0.7827
AT1G73350			unknown protein		Lus10042294 [exp]	19.0	0.8351
AT3G51270			protein serine/threonine kinas...		Lus10013682 [exp]	23.2	0.8422
AT5G40530			S-adenosyl-L-methionine-depend...		Lus10022276 [exp]	24.5	0.8110

Compare expression of checked genes

Lus10003966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.