Plant FIBer expression Database

Lus10003967 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64290 791 / 0 DCT, DIT2.1 dicarboxylate transport 2.1 (.1)
AT5G64280 668 / 0 DIT2.2 dicarboxylate transporter 2.2 (.1)
AT5G12860 442 / 1e-149 DIT1 dicarboxylate transporter 1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027368
[exp]
453 / 4e-154 AT5G12860 838 / 0.0 dicarboxylate transporter 1 (.1.2)
Lus10002560
[exp]
453 / 5e-154 AT5G12860 841 / 0.0 dicarboxylate transporter 1 (.1.2)
Lus10023779
[exp]
400 / 2e-137 AT5G64290 326 / 1e-108 dicarboxylate transport 2.1 (.1)
Lus10023778
[exp]
274 / 3e-90 AT5G64290 256 / 7e-84 dicarboxylate transport 2.1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G050500
[exp]
794 / 0 AT5G64290 707 / 0.0 dicarboxylate transport 2.1 (.1)
Potri.001G310600
[exp]
734 / 0 AT5G64290 652 / 0.0 dicarboxylate transport 2.1 (.1)
Potri.009G053800
[exp]
442 / 1e-149 AT5G12860 801 / 0.0 dicarboxylate transporter 1 (.1.2)
Potri.001G258600
[exp]
437 / 7e-148 AT5G12860 777 / 0.0 dicarboxylate transporter 1 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0182 IT PF00939 Na_sulph_symp Sodium:sulfate symporter transmembrane region
Representative CDS sequence
>Lus10003967 pacid=23157460 polypeptide=Lus10003967 locus=Lus10003967.g ID=Lus10003967.BGIv1.0 annot-version=v1.0
ATGGAGAGCTTGGCTGCCCTTCATTCTTTCTCCGCCACCACAACTTCAATCTCCTTCCCATATTCTCGTTCCTCCTTGCTCCACAGATCTCCACCCAAAC
AACCCAGATTCTCGTCCTCCACTTCCCTCTCCTCATCCTTCCGCCCTCTCCGATCACCACTCTCCGCACCTCCTCTTCGTATTAAACCCCTTTTTCCCTT
CAATCACCCATCCCTTCTTCCCGCACGTTGTTCTAAAGATCAGTCTTCCTCATCCCCAACCCCACCCCCGCCTGTTCAGGGAGCCAAGCTCGTCCCCCTC
GTGGTTTCCGTCGGAATCGGATTGATTGTTCGTTTCGCCGTTGCCAGGCCAGCTGCCGTTACTCCCCAGGCATGGCAATTGCTCTCGATTTTCCTCTCCA
CCATCGCCGGATTGGTGCTCAGTCCACTCCCCGTTGGTGCTTGGGCATTCCTCGGCCTGACCACCAGTATCGTCACCAAGACTCTGTCTTTCTCCGCTGC
ATTCAGTGCCTTTACCAGCGAGGTCATTTGGTTGATTGTGATTTCCTTCTTCTTCGCTCGTGGGTTTGTCAAGACTGGCTTAGGGGATAGGATTGCTACC
TACTTTGTTAAGTGGCTTGGCAAGAGCACTTTGGGTTTGTCTTACGGACTCACCATCAGCGAAGCCCTCATTGCTCCTGCAATGCCCAGTACTACTGCCA
GAGCTGGTGGTGTTTTCTTGCCCATCATCAAATCCTTGTCTCTCTCCGCTGGTAGTAAGCCCGGTGACCCTTCTTCCAAGAAGCTTGGTTCTTACCTCCT
CATGTCCCAGTTCCAGTCTGCTGGCAACTCGAGTGCCCTTTTCCTGACTGCAGCTGCGCAAAATTTGCTGTGCCTTAAATTGGCGGAGGAACTTGGGGTG
AAGCTTTCAAGTCCATGGGTGTCTTGGTTCAAGGCTGCTAGTTTGCCAGCAATAGTGTGTCTTCTAGTTACACCACTTGTATTATATAAGATCTTCCCCC
CTGAAATCAAGGACACCCCTGATGCCCCTGCTTTGGCTGCCAAGAAACTAGAACAGATGGGTCCTGTCACCAAAAACGAGTGGACTATGGTCGGGACAAT
GGTTCTTGCCGTTTCTTTATGGATATTTGGAGATGCCCTTGGTGTACCGAGTGTAGTAGCTGCAATGATCGGGTTGTCGATACTTCTGTTGTTGGGGGGG
CTTGAGTGGGAAGACTGCTTAAGTGAAAAGTCAGCATGGGATACACTGGCTTGGTTTGCAGTTCTAGTGGGAATGGCGGGGCAATTAACGAACCTGGGTA
TTGTAACATGGATGTCTGGTTGTGTGGGGAAGATGCTTGAATCTCTATCTTTGAGCTGGCCAGCCGCATTTGGGTTGCTTCAGGCTGCTTATTTCTTTAT
ACACTACCTATTTGCGAGTCAAACTGGGCACGTGGGAGCTCTCTATTCTGCATTCCTTGCAATGCATCTCGCAGCAAATGTACCAGGAGTTGTGGCAGCA
CTTGCTTTGGCATATAACACTAATCTTTTTGGCGCTCTTACACATTACAGTAGTGGCCAGGCTGCTGTATATTATGGAGCTGGATACGTTGAGCTTCCGG
ATGTATTCAAGGTGGGATTCACGATGGCGGTGGTGAATGCTATCATCTGGGGAGTAGTTGGCTCTTTCTGGTGGAAATTCTTGGGATTATATTGA
AA sequence
>Lus10003967 pacid=23157460 polypeptide=Lus10003967 locus=Lus10003967.g ID=Lus10003967.BGIv1.0 annot-version=v1.0
MESLAALHSFSATTTSISFPYSRSSLLHRSPPKQPRFSSSTSLSSSFRPLRSPLSAPPLRIKPLFPFNHPSLLPARCSKDQSSSSPTPPPPVQGAKLVPL
VVSVGIGLIVRFAVARPAAVTPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTKTLSFSAAFSAFTSEVIWLIVISFFFARGFVKTGLGDRIAT
YFVKWLGKSTLGLSYGLTISEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDPSSKKLGSYLLMSQFQSAGNSSALFLTAAAQNLLCLKLAEELGV
KLSSPWVSWFKAASLPAIVCLLVTPLVLYKIFPPEIKDTPDAPALAAKKLEQMGPVTKNEWTMVGTMVLAVSLWIFGDALGVPSVVAAMIGLSILLLLGG
LEWEDCLSEKSAWDTLAWFAVLVGMAGQLTNLGIVTWMSGCVGKMLESLSLSWPAAFGLLQAAYFFIHYLFASQTGHVGALYSAFLAMHLAANVPGVVAA
LALAYNTNLFGALTHYSSGQAAVYYGAGYVELPDVFKVGFTMAVVNAIIWGVVGSFWWKFLGLY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G64290 DCT, DIT2.1 dicarboxylate transport 2.1 (.... Lus10003967
[exp]
0 1
AT4G14930 Survival protein SurE-like pho... Lus10004909
[exp]
2.2 0.8847
AT4G39840 unknown protein Lus10041688
[exp]
2.8 0.8941
AT2G26730 Leucine-rich repeat protein ki... Lus10017756
[exp]
3.0 0.8932
AT2G28100 ATFUC1 alpha-L-fucosidase 1 (.1) Lus10016140
[exp]
3.7 0.8675
AT3G02630 Plant stearoyl-acyl-carrier-pr... Lus10027486
[exp]
5.5 0.8654
AT1G53240 mMDH1 mitochondrial malate dehydroge... Lus10017939
[exp]
6.0 0.9077
AT2G25530 AFG1-like ATPase family protei... Lus10002025
[exp]
6.5 0.8551
AT5G07900 Mitochondrial transcription te... Lus10040820
[exp]
8.9 0.8610
AT1G63000 UER1, NRS/ER "UDP-4-KETO-6-DEOXY-D-GLUCOSE-... Lus10006719
[exp]
12.3 0.8906
AT5G67360 ARA12 Subtilase family protein (.1) Lus10011089
[exp]
13.3 0.8741

Lus10003967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.