Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38520 392 / 3e-136 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G19850 150 / 3e-42 alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 144 / 3e-40 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G25290 82 / 9e-17 DNA photolyases;DNA photolyases (.1) AT5G13800 74 / 4e-14 CRN1, PPH Co-regulated with NYE1, pheophytinase (.1.2) AT1G80280 60 / 1e-09 alpha/beta-Hydrolases superfamily protein (.1) AT4G12830 56 / 1e-08 alpha/beta-Hydrolases superfamily protein (.1) AT4G24140 53 / 2e-07 BDG3 alpha/beta-Hydrolases superfamily protein (.1) AT5G17720 51 / 8e-07 alpha/beta-Hydrolases superfamily protein (.1) AT1G15490 49 / 3e-06 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023788 [exp] 171 / 9e-52 AT5G38520 102 / 5e-26 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10028315 [exp] 146 / 2e-40 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10025172 [exp] 151 / 6e-40 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10041763 [exp] 132 / 5e-35 AT4G36530 484 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031137 [exp] 98 / 5e-22 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10031716 [exp] 85 / 1e-17 AT4G25290 700 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10019755 [exp] 82 / 1e-16 AT5G13800 589 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Lus10005320 [exp] 77 / 2e-15 AT5G13800 551 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Lus10016051 [exp] 61 / 1e-09 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G063900 [exp] 447 / 2e-157 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G121000 [exp] 153 / 6e-43 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G219700 [exp] 151 / 5e-42 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G129500 [exp] 86 / 3e-18 AT4G25290 809 / 0.0 DNA photolyases;DNA photolyases (.1) Potri.009G054800 [exp] 79 / 1e-15 AT5G13800 610 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Potri.003G059400 [exp] 57 / 7e-09 AT1G15490 845 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G174900 [exp] 56 / 2e-08 AT1G80280 828 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G175700 [exp] 52 / 4e-07 AT4G12830 545 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G235200 [exp] 44 / 0.0001 AT4G24160 645 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G027300 [exp] 42 / 0.0006 AT4G24160 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10003969 pacid=23157488 polypeptide=Lus10003969 locus=Lus10003969.g ID=Lus10003969.BGIv1.0 annot-version=v1.0 ATGGTGGTGGCCTTACTGCGTCTGCTTCCGATGGGGAACCAACTCCACTTGGTCACTCCAACTCCACTACCACCGTCACACAGAGCGCCGCGGCGGCAGA GGAATTTGAAATTAACGATAAGCTCTTCCTCTATCGACGCCCCATCTCCTTCTACTTCATCCGCCGTACCCGCTCTGCAGGCAGTGGATATCAAAGAGCG ATGCTTGAAATGGAGTTGGAAGAGCCAATACTCCATCAACTACTTCGTTGCTAACCAATCATCCTCCTCCGCTACTCCCTCACCGTCTCTTCTCCTCGTT CACGGCTTTGGCGCCTCCATTTCTCACTGGCGCAGAAACATAGAGACATTGGCCCAAAATCACACCGTCTACGCCATTGATCTTCTAGGGTTTGGAGATT CTGATAAACCAAAGGGATTTTCATACACCATGGAAACATGGGCTGAGTTGATTCTGGATTTCTTGCATCAAGTAATTCAAAAACCGACTGTATTGATTGG TAACTCCGTGGGGAGTCTTGCTTGTGTTATTGCTGCCTCCTCCACTGTTTGCGGCCTGGTTCTATTGAATTGTGCTGGCGGGATGAACAACAAGGCCATT GTGGATGATTGGAGGATAAGACTGTTGTTGCCTTTGTTTTGGTTCATCGACTTTTTGTTGAAGCAACCATCCATTGCATCAGCCATCTTTGAACGTGTCA AACAAAGGGATACACTTAAGAACGTGCTATTATCCGTCTACGGCAACAAAGAATCTGTGGATGAAGAATTGGTAGAGATCATTAGAGGACCAGCATGCGA TGAAGGTGCATTGGATGCCTTTGTTTCGATAGTTACAGGGCCTCCGGGGCCGAATCCTGTGACCTTGATGCAGACTATTTCACAGCCTATTCTCATACTA TGGGGAGACGAGGACCCTTTCACTCCTCTTGATGGTCCTGTTGGTAAATACTTCTCGTCTCTGCCATCAAATTCGTCGAATGTGAGCCTGTGTGTATTGG AAGGAGTTGGACATTGCCCCCATGATGACATGCCTGAGTTGGTTCATCAGAATTTGCTTCCGTGGTTGGGTCAGCTTGCTGCTGCTGCTGCTGCTACTTA A
AA sequence Show only first row Show all	>Lus10003969 pacid=23157488 polypeptide=Lus10003969 locus=Lus10003969.g ID=Lus10003969.BGIv1.0 annot-version=v1.0 MVVALLRLLPMGNQLHLVTPTPLPPSHRAPRRQRNLKLTISSSSIDAPSPSTSSAVPALQAVDIKERCLKWSWKSQYSINYFVANQSSSSATPSPSLLLV HGFGASISHWRRNIETLAQNHTVYAIDLLGFGDSDKPKGFSYTMETWAELILDFLHQVIQKPTVLIGNSVGSLACVIAASSTVCGLVLLNCAGGMNNKAI VDDWRIRLLLPLFWFIDFLLKQPSIASAIFERVKQRDTLKNVLLSVYGNKESVDEELVEIIRGPACDEGALDAFVSIVTGPPGPNPVTLMQTISQPILIL WGDEDPFTPLDGPVGKYFSSLPSNSSNVSLCVLEGVGHCPHDDMPELVHQNLLPWLGQLAAAAAAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38520			alpha/beta-Hydrolases superfam...		Lus10003969 [exp]	0	1
AT3G25690		AtCHUP1, CHUP1	Arabidopsis thaliana CHLOROPLA...		Lus10034382 [exp]	2.2	0.9371
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Lus10000856 [exp]	7.9	0.8951
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10039629 [exp]	8.6	0.9319
AT1G78995			unknown protein		Lus10033323 [exp]	9.9	0.9253
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10022278 [exp]	12.2	0.8916
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10002139 [exp]	13.5	0.8770
AT2G12400			unknown protein		Lus10008813 [exp]	13.7	0.9093
AT1G73885			unknown protein		Lus10005112 [exp]	13.7	0.9211
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Lus10040686 [exp]	15.2	0.9157
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10029559 [exp]	16.7	0.9175

Compare expression of checked genes

Lus10003969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.