Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13970 964 / 0 zinc ion binding (.1) AT1G60560 570 / 0 SWIM zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035898 [exp] 587 / 0 AT1G60560 1123 / 0.0 SWIM zinc finger family protein (.1.2) Lus10025765 [exp] 581 / 0 AT1G60560 1112 / 0.0 SWIM zinc finger family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G054600 [exp] 1107 / 0 AT4G13970 1033 / 0.0 zinc ion binding (.1) Potri.002G140800 [exp] 1027 / 0 AT4G13970 940 / 0.0 zinc ion binding (.1) Potri.006G245800 [exp] 634 / 0 AT1G60560 649 / 0.0 SWIM zinc finger family protein (.1.2) Potri.007G106000 [exp] 577 / 0 AT1G60560 1192 / 0.0 SWIM zinc finger family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003970 pacid=23157487 polypeptide=Lus10003970 locus=Lus10003970.g ID=Lus10003970.BGIv1.0 annot-version=v1.0 ATGGCTAGGTGGGATGAGATTCTGTCGCTACCTGTACAGAATCCTCCAACCTTGGAATTTTCTGCTGGCGATCTTGTTTGGTCCAAGGTGGAAGGTTGGC GGGACAATTTGGACAGGCTAGCTCTTATACCTTTTGCTAGGGTTGACGATTTCTTAAGAGGTGAGTCTGCAAATAAAGATTGCCCTACAAGTTTCCATGT CGAGGCCAGACGGCGTAGGCCTCCGCAGTCATCTTGCAAGAAAAAGGTTGATGGCATTCTTGAGTACATACTGTATTGGTGTTCATTTGGCCCTGATGAT CATAGAAAAGGCGGTCTAGTGAGACCAAGTAGGAATACCTATGTTCCAAAGAAGAAAAATGCTGGTCGACCTAATACTAAGAGGGGATGCACCTGCCACT TTATCGTCAAACGTTTGATTGCTGAACCATCTGTAGCCCTGGTAATTTATAACCAAGACAAGCATATTGATAAACAGGGTTTGCCATGTCATGGTCCGCA GGACAAGAAGTCTGAAGGAACCCGTGCTATGTTTGCACCTTACATTTCAGAAGATCTGCGTCTTCGTGTTTATTCTTTATTGTACATTGGGGTCTCTGTC GAGACCATTATGCAAAAGCACAATGAATCTGTTGAGAAACAGGGTGGGCCTAGTAATCGTGATGACCTCTTAACCCATAGGTATGTCCGAAGGCAGGAAA GATGCATCAGAAGATCAACGTACAAGCTGGATGAAGATGATGCTGCTAGTATTAGCTTGTGGGTTGAAAGCCACCAGACGAATGTGTTCTTTTATCAGGA CTTCTCAGATATTGACCCTTTCATATTGGGAATTCAAACAGAGTGGCAGTTGCAACAGATGATTCGGTTTGGAAATAAAAGACTTATGGCTTCCGATTCA ATCTTCGGACCAAACAAACTAAAGTATCCTGTTCAGAGTCTTTTGGTGTTCAACTCAGAGAACAAGGCTATACCAGTGGCTTGGATCATATCACCCAGAT TTACTACTACAGATGTACACAAGTGGATGAGACCACTTTATAATAGAGTCCGTTCAAAGGATCCTTCGTGGATGTTAGCTGGCTTTATAATTGATGACCC GTTGATGGATATTATTGCAATCAGGGATGTCTTCCAGTGCTCAATATTGTTATCTTTTTGGCGAGTCCGACATTCATGGCACAAAAACTTATTAAAGAGG TGCACTGAAACAGAACGTCTGGAGATATCACAGTGGCTTGGGCTAATGGTTGATGACATCCGCACAGGACGCACAAATATGGATTCATTGGGTACTTTCA TGGGGGGATTTGGAGATGGCTCTTATTTTATCGATTACTTCAAGGCAATCTGGTACCCTAAAATAGGAAATTGGGAAAATGCACTCAAAACTCTTCCATT GGCGGGCCAGGAAACTAGTGCTTCCCTGGAGTTTTACCACAATCAACTGAAAGTCAGACTTTTGAATGAGAAGAATTCTGATGTCTATCAACGTGCCGAT TGGCTTGTTGATAAATTGGTTACAAAAGTTCACTCTTACTTTTGGCTTGATGAATTTTCGGAGAAGGACTATTTTGCAAGATACTGGAAAGATGAATGGA TCAGTGGTTTAACATCTTGGCGCAAAGCATTGAAACTTCCCGACTCTGATGTCGTTTTCGAAGGGACCTGTGCGAAAGTGACAGACCAAGTTGATCGAGA TAAGGTATATACTGTGAGGAACCCGGGTTCAGAATTATCTCTTTGTGATTGCACTTGGGCAGGGATGGGCCACCTTTGTGAGCATGTCTTCAAAGTTAGT AAGTTGCTTCATGACAAAGACAAGAGCAATCCATCTATTACTCTATCTCAGTACAGGAAGACTCTATTTGAGATGCTACATTGCGCTACCAATGATTCTT TGATTGGTGATCATGCCATCTCTCTTTCCGTCATTGTACAGAAGCAGTTAAGTTTATTAGTTAGTCAGGACAGCAGATCAACCACTAGTGAAACGTTTCG GGAAAAATTCTGTGGCATCGTTCAGAAGAAAATGAGTGAGCCGGATTTCGCACAACGAGACACAAGACTAGTTAACCAAAGCTCTGTCAGTAAGGGCGGA GAGATGAGCGATCGTTGGCTAAGTCATCAGGGTTCAGAAGATTCTACTGGCAATGAAGAAGAAGCCACATGCACTGCTATGGATGTTGACAGGTTGCCAT CATTCCCCAGTAAGAGTGATTATGTGATGAATGATGAGACTCAATGA
AA sequence Show only first row Show all	>Lus10003970 pacid=23157487 polypeptide=Lus10003970 locus=Lus10003970.g ID=Lus10003970.BGIv1.0 annot-version=v1.0 MARWDEILSLPVQNPPTLEFSAGDLVWSKVEGWRDNLDRLALIPFARVDDFLRGESANKDCPTSFHVEARRRRPPQSSCKKKVDGILEYILYWCSFGPDD HRKGGLVRPSRNTYVPKKKNAGRPNTKRGCTCHFIVKRLIAEPSVALVIYNQDKHIDKQGLPCHGPQDKKSEGTRAMFAPYISEDLRLRVYSLLYIGVSV ETIMQKHNESVEKQGGPSNRDDLLTHRYVRRQERCIRRSTYKLDEDDAASISLWVESHQTNVFFYQDFSDIDPFILGIQTEWQLQQMIRFGNKRLMASDS IFGPNKLKYPVQSLLVFNSENKAIPVAWIISPRFTTTDVHKWMRPLYNRVRSKDPSWMLAGFIIDDPLMDIIAIRDVFQCSILLSFWRVRHSWHKNLLKR CTETERLEISQWLGLMVDDIRTGRTNMDSLGTFMGGFGDGSYFIDYFKAIWYPKIGNWENALKTLPLAGQETSASLEFYHNQLKVRLLNEKNSDVYQRAD WLVDKLVTKVHSYFWLDEFSEKDYFARYWKDEWISGLTSWRKALKLPDSDVVFEGTCAKVTDQVDRDKVYTVRNPGSELSLCDCTWAGMGHLCEHVFKVS KLLHDKDKSNPSITLSQYRKTLFEMLHCATNDSLIGDHAISLSVIVQKQLSLLVSQDSRSTTSETFREKFCGIVQKKMSEPDFAQRDTRLVNQSSVSKGG EMSDRWLSHQGSEDSTGNEEEATCTAMDVDRLPSFPSKSDYVMNDETQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13970			zinc ion binding (.1)		Lus10003970 [exp]	0	1
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10010729 [exp]	2.4	0.9506
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10029217 [exp]	5.7	0.9137
AT5G11700			unknown protein		Lus10005497 [exp]	7.2	0.9061
AT3G58560			DNAse I-like superfamily prote...		Lus10016206 [exp]	7.7	0.9162
AT2G46915			Protein of unknown function (D...		Lus10007214 [exp]	8.1	0.8850
AT5G01730		ATSCAR4, WAVE3	SCAR family protein 4 (.1)		Lus10029437 [exp]	8.2	0.9163
AT3G50380			Protein of unknown function (D...		Lus10022476 [exp]	8.7	0.9163
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10033845 [exp]	9.5	0.9150
AT5G58270		ABCB25, ATATM3,...	STARIK 1, ARABIDOPSIS THALIANA...		Lus10019120 [exp]	10.5	0.8939
AT1G27430			GYF domain-containing protein ...		Lus10003139 [exp]	10.7	0.9310

Compare expression of checked genes

Lus10003970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.