Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02270 505 / 9e-176 ABCI20, ATNAP9 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) AT2G29050 386 / 2e-128 ATRBL1 RHOMBOID-like 1 (.1.2) AT3G53780 354 / 9e-116 ATRBL4 RHOMBOID-like protein 4 (.1.2) AT1G63120 312 / 7e-101 ATRBL2 RHOMBOID-like 2 (.1) AT5G44110 279 / 1e-88 ABCI21, ATPOP1, ATNAP2, POP1 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN, ATP-binding cassette A21, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT1G03905 274 / 2e-86 ABCI19 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G07250 273 / 2e-85 ATRBL3 RHOMBOID-like protein 3 (.1.2) AT1G12750 267 / 2e-83 ATRBL6 RHOMBOID-like protein 6 (.1.2.3) AT1G52580 233 / 2e-70 ATRBL5 RHOMBOID-like protein 5 (.1) AT4G23070 227 / 2e-68 ATRBL7 RHOMBOID-like protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023792 [exp] 614 / 0 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10023789 [exp] 604 / 0 AT2G29050 488 / 3e-173 RHOMBOID-like 1 (.1.2) Lus10010838 [exp] 506 / 4e-175 AT5G02270 514 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10004965 [exp] 368 / 1e-121 AT2G29050 486 / 6e-173 RHOMBOID-like 1 (.1.2) Lus10024497 [exp] 342 / 4e-112 AT1G63120 450 / 2e-160 RHOMBOID-like 2 (.1) Lus10017840 [exp] 339 / 5e-111 AT1G63120 441 / 9e-157 RHOMBOID-like 2 (.1) Lus10005464 [exp] 340 / 2e-110 AT2G29050 453 / 1e-159 RHOMBOID-like 1 (.1.2) Lus10024914 [exp] 272 / 2e-85 AT1G03905 439 / 2e-156 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022909 [exp] 271 / 4e-85 AT1G03905 436 / 1e-155 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G086000 [exp] 516 / 6e-180 AT5G02270 511 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Potri.003G155800 [exp] 509 / 3e-177 AT5G02270 503 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Potri.006G086300 [exp] 469 / 2e-160 AT2G29050 422 / 6e-147 RHOMBOID-like 1 (.1.2) Potri.009G031900 [exp] 385 / 3e-128 AT2G29050 434 / 7e-152 RHOMBOID-like 1 (.1.2) Potri.001G241300 [exp] 384 / 7e-128 AT2G29050 441 / 6e-155 RHOMBOID-like 1 (.1.2) Potri.003G122900 [exp] 341 / 7e-112 AT1G63120 374 / 3e-130 RHOMBOID-like 2 (.1) Potri.001G108700 [exp] 328 / 7e-107 AT1G63120 332 / 8e-114 RHOMBOID-like 2 (.1) Potri.015G142000 [exp] 312 / 2e-100 AT5G07250 294 / 2e-98 RHOMBOID-like protein 3 (.1.2) Potri.012G139600 [exp] 300 / 7e-96 AT5G07250 324 / 6e-110 RHOMBOID-like protein 3 (.1.2) Potri.002G036300 [exp] 279 / 2e-88 AT1G03905 441 / 2e-157 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [flax] [poplar] Rhomboid-like PF01694 [flax] [poplar] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Lus10003971 pacid=23157467 polypeptide=Lus10003971 locus=Lus10003971.g ID=Lus10003971.BGIv1.0 annot-version=v1.0 ATGGACAAACCCCGCCCTCCTCCACCTCCCCAGTCAGAGATCGAGATGAGGTTCAATTCAGTGCGGGGAAACGGCGTCGTACACCCGGCGATTTCGGATT CGGCGCCGGCACAACAACAACAACAACAACAACAACAACAACCTCGAAGCTACATACAAGTAAAGGATCCTAAGAAATGGGTAACCTGGTTAATACCTTG TTTCGTGCTTGCCAATATCATCATGTTCATAATCACTATGTACAAGAACAATTGTCCCAAGAACTCCGTCTCTTGCGTTGCTCGCTTCCTTGGTAGGTTC TCCTTTCAGCCCTTTAAGGAGAATCCTCTGCTGGGTCCTTCTTCCACTACGTTACGGGATATGGGGGCTTTAGATGTAAACAAAGTGGTACACCAACACC AAGGATGGCGTCTTCTCAGTTGCAATTGGTTACATGGAGGGGTTTTCCATTTGCTGGCCAATATGTTGAGTCTTTTGGTCATTGGAATTCGTCTCGAGCA AGAATTCGGATTTGTGAAAATTGGGTTGCTGTATGTAATCTCTGGATTTGGTGGAAGTTTGTTATCGGCCCTTTTCATTCAATCTAACATCTCTGTGGGT GCTTCTGGCGCTCTATTTGGGTTACTTGGAGCCATGCTTTCTGAACTAATCACCAATTGGTCAATCTATGCCAACAAGGTGGCAGCTTTTATCACTCTCC TGCTCATCGTTGTGATCAACTTAGCAGTGGGAATCCTTCCCCATGTTGACAACTTCGCCCACATTGGAGGATTCCTCTCAGGATTTCTCCTCGGATTCGT GTTTCTGATTCGGCCCCAGTATGGATGGTTCAATAAAAGATATGCTCCAATTGGATACCCTCCAGGCCCTCCAAAATCAAAGTTCAAGAGATATCAGTTG ATATTGTGGATCGGAGCTATCATTCTCATTGTTGCTGGATTGGCGGTGGGGATTGCTGCGCTTCTCCGCGGAGTTGATGCGAACAAGCACTGTTCGTGGT GTCATTATCTGTCTTGTGTCCCTACAGGGAGATGGAGCTGCAGCACTCAGCCTGCATACTGCTCGTCGGTCCAGTCGGGGAACCAGCTGAACATAACATG CTCGAGCAATGGGAAATCGGGGGTTTATATAGTACCAAATGCGACAGCGGCGAAGAAGGGGGTAATGGCGATCATGGATCAGTCCCCACGACAGCCAACG ATCGAAATCAATGGCCTCAGGTTCACATATCCAGGAATCGACGGCCACCCTCCGCCTGGTTCCAAACCCCTCATCGAAGATCTCTCGCTCACACTCAATG CCGGCGACCGGTGCCTCCTCGTCGGATCCAATGGCGCTGGGAAGACGACGATACTGAAGATAATGGGAGGGAAGCATATGGTGGAGCCTCACATGGTTCG GGTGTTGGGCAGGTCTGCTTTCCACGACACTGCCTTGTCTGCTTCCGGCGATCTTTCCTATCTCGGAGGAGAGTGGCGGAGGGATGTTGCTTTTGCTGGG TTTGAGGTTCCAATTCAAATGGATATTTCTGCAGAGAAGATGTTGTTTGGTGTGGCTGGGATCGACACTCGGAGAAGAGATGAGCTGATCAAGGTATTGG ACATTGATCTTTCATGGAGAATGCACAAAGTTTCTGATGGTCAGAGAAGAAGAGTTCAGATCTGTATGGGCCTCCTGAGACCATTCAAGGTTCTTTTACT GGATGAGATAACAGTTGACCTGGATGTGCTAGCTCGGGCTGATCTTTTGACATTCCTAAGGAAGGAATGCGAGGAAAGAGGTGCCACTATCATCTATGCC ACTCACATTTTTGATGGGTTAGAGGAGTGGCCTACACATATGGTGTATGTGGCTAGTGGGAAGTTGCAATTAGCAATGCCAATGTCAAAGATCAAGCAGA TGAGTAATCTGTCTCTGATGAGAACAGTTGAAGGTTGGCTGAGGAAAGAGAGGGACGAGGAGAGGAAGAGGAGGAAAGAGAGGAAAGCTAAAGGACTGCC GGAGTTTGAAAACCAGCAGGTTGAGGGAAGTCGGGTAGTTGGTGGAGATCCAGCTCGTTCTGCAGCATTTAAAATGACAAACAATGGATGGGCAGCTGGG AGGCTGCATTCCACTATTGCAGGGGAAGACAACTTCAACCTCAGCTCCAACAGAGTTATGAGGCAGTGA
AA sequence Show only first row Show all	>Lus10003971 pacid=23157467 polypeptide=Lus10003971 locus=Lus10003971.g ID=Lus10003971.BGIv1.0 annot-version=v1.0 MDKPRPPPPPQSEIEMRFNSVRGNGVVHPAISDSAPAQQQQQQQQQQPRSYIQVKDPKKWVTWLIPCFVLANIIMFIITMYKNNCPKNSVSCVARFLGRF SFQPFKENPLLGPSSTTLRDMGALDVNKVVHQHQGWRLLSCNWLHGGVFHLLANMLSLLVIGIRLEQEFGFVKIGLLYVISGFGGSLLSALFIQSNISVG ASGALFGLLGAMLSELITNWSIYANKVAAFITLLLIVVINLAVGILPHVDNFAHIGGFLSGFLLGFVFLIRPQYGWFNKRYAPIGYPPGPPKSKFKRYQL ILWIGAIILIVAGLAVGIAALLRGVDANKHCSWCHYLSCVPTGRWSCSTQPAYCSSVQSGNQLNITCSSNGKSGVYIVPNATAAKKGVMAIMDQSPRQPT IEINGLRFTYPGIDGHPPPGSKPLIEDLSLTLNAGDRCLLVGSNGAGKTTILKIMGGKHMVEPHMVRVLGRSAFHDTALSASGDLSYLGGEWRRDVAFAG FEVPIQMDISAEKMLFGVAGIDTRRRDELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLRPFKVLLLDEITVDLDVLARADLLTFLRKECEERGATIIYA THIFDGLEEWPTHMVYVASGKLQLAMPMSKIKQMSNLSLMRTVEGWLRKERDEERKRRKERKAKGLPEFENQQVEGSRVVGGDPARSAAFKMTNNGWAAG RLHSTIAGEDNFNLSSNRVMRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Lus10003971 [exp]	0	1
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10010728 [exp]	2.4	0.8147
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10016003 [exp]	4.1	0.8276
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10002346 [exp]	4.6	0.7834
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020850 [exp]	8.1	0.7901
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Lus10037608 [exp]	8.9	0.7945
AT4G01575			serine protease inhibitor, Kaz...		Lus10030166 [exp]	9.0	0.7719
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10016960 [exp]	9.3	0.8141
AT1G03905		ABCI19	ATP-binding cassette I19, P-lo...		Lus10022909 [exp]	13.0	0.7673
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10015301 [exp]	13.4	0.7676
AT5G05250			unknown protein		Lus10030528 [exp]	26.5	0.7594

Compare expression of checked genes

Lus10003971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.