Plant FIBer expression Database

Lus10003973 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G02410 563 / 0 ALG10 homolog of yeast ALG10, DIE2/ALG10 family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023796
[exp]
954 / 0 AT5G02410 600 / 0.0 homolog of yeast ALG10, DIE2/ALG10 family (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G084800
[exp]
654 / 0 AT5G02410 558 / 0.0 homolog of yeast ALG10, DIE2/ALG10 family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0111 GT-C PF04922 DIE2_ALG10 DIE2/ALG10 family
Representative CDS sequence
>Lus10003973 pacid=23157454 polypeptide=Lus10003973 locus=Lus10003973.g ID=Lus10003973.BGIv1.0 annot-version=v1.0
ATGGGGAAATTGGTAGTCGCATTGATAGTCAGCTCATGGGCGATTCCGATTTCAATCATCGTCAATCGGATGGTCCCCGACGCTTATATGGATGAGATAT
TCCATCTACCTCAGGCGCAGCACTACTGCAAGGCCAATTTCCGGAGTTGGGATCCCATGATCACTACTCCCCCCGGCTTGTACAGTCTCTCACTTGCACA
TGTTGCTTCTTTGTTTCCAGCCGTGTATGCTGTGCGAGGTTCATCGTCACGCTTCTTTGAACTGTGCTCTACCTCAATACTACGGTCCACAAACATCGCA
TTGGCTGTTTTGTGCAGTGTTCTTATGTACGACATTCTTACCTGCGTCCGACCAAATCTTGGAGAAAGGAAAGCAACGTTCCTTTCTATTGTCCTGGCGT
TGTACCCTCTGCATTGGTTCTTCACTTTCCTTTACTATACAGATGTTGCATCACTTACCGTGGTGCTTGCAATGTACCTCTTGTGTTTGAAGAAGAGATA
CTTCCTCGGTGCACTGATGGGGGCATTTGCTGTTTTCATTAGACAGACGAATGTTGTGTGGGTAATTTTTGTTGCGTGCGCGGGAGTAATAGACATGGCT
TCACCTCATCTGAAGGAGGAAAGTGAGACGGTAGACTTGAGGGTTGTAGGCGACGAAAGACTGAGGGCAGTTTCCAACTATCACGTCGATGCAGTTGGAA
ACCTGAGACGAAGAAAACCCAATATGGAGAATAACAACAGCCCGGTGTTTGTTAGAAACTCCTCTAAAAGCAAGCCGGTGCTTGTTAGAAGCCCCTCTTT
AATAATTAATTCCAGAGGGTTACTCGATGAAATTCGAGTAATCTGCTTGAAATCATGGCAAATGAAGTGGAGGCTTTTATTGTCCTTCAGCCCCTTCTTT
ATGGTATTGGCGGCCTTTGTTGCTTTTGTCCGTTGGAATGGCAGTGTGGTTCTTGGTGCAAAAGAAGCTCATGCTGTGTCTCCACATTTTGCACAACTAA
TGTACTTTAGTCTAGTTTCTGCTCTCGCTGCAACTCCTCTTCATTTCTCACCAAGTCATATGGCAGCTCTGTTCCGGTGGTCCTGGAAGAAAGGATCCCT
TGGTATTTTTCAATGGCTAGTTGCTTTAATAGCCGGGTTTTTCTCCGTCCACTCTTTCAGCATAGCTCATCCATATCTTCTCGCTGACAATCGACATTAC
ACCTTCTACCTGTGGAGGAAGATTGTCAATGCTCACAAGTTGGGGAAGTACACTCTGATCCCACTCTATGTATATTCCTGGTTTTCTATTTTCCGCACAA
TAGGGAAAGTTAGACCAAGAGTATGGGTGCTGGCATATTTCTTGGCGACAGCCGCTGTACTTGTTCCTGCGCCTTTGATCGAGTTCCGATACTACACCAT
ACCCTTCTTTTTCCTGATGCTACACTCCTCCATCAGTTATAGAAGTTTGATGCTGATGGGTCTTGGTTATTCTGCAATCAACGCTTTCACGATGATGGTG
TTCTTATGCCGTCCCTTCTATTGGAGCCATGAAGCTGGCCTCCAGCGGTTTATTTGGTAG
AA sequence
>Lus10003973 pacid=23157454 polypeptide=Lus10003973 locus=Lus10003973.g ID=Lus10003973.BGIv1.0 annot-version=v1.0
MGKLVVALIVSSWAIPISIIVNRMVPDAYMDEIFHLPQAQHYCKANFRSWDPMITTPPGLYSLSLAHVASLFPAVYAVRGSSSRFFELCSTSILRSTNIA
LAVLCSVLMYDILTCVRPNLGERKATFLSIVLALYPLHWFFTFLYYTDVASLTVVLAMYLLCLKKRYFLGALMGAFAVFIRQTNVVWVIFVACAGVIDMA
SPHLKEESETVDLRVVGDERLRAVSNYHVDAVGNLRRRKPNMENNNSPVFVRNSSKSKPVLVRSPSLIINSRGLLDEIRVICLKSWQMKWRLLLSFSPFF
MVLAAFVAFVRWNGSVVLGAKEAHAVSPHFAQLMYFSLVSALAATPLHFSPSHMAALFRWSWKKGSLGIFQWLVALIAGFFSVHSFSIAHPYLLADNRHY
TFYLWRKIVNAHKLGKYTLIPLYVYSWFSIFRTIGKVRPRVWVLAYFLATAAVLVPAPLIEFRYYTIPFFFLMLHSSISYRSLMLMGLGYSAINAFTMMV
FLCRPFYWSHEAGLQRFIW

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G02410 ALG10 homolog of yeast ALG10, DIE2/A... Lus10003973
[exp]
0 1
AT1G30970 C2H2ZnF SUF4 suppressor of FRIGIDA4, zinc f... Lus10038373
[exp]
2.0 0.8426
AT1G04080 PRP39 Tetratricopeptide repeat (TPR)... Lus10024952
[exp]
4.9 0.8088
AT1G30970 C2H2ZnF SUF4 suppressor of FRIGIDA4, zinc f... Lus10036234
[exp]
4.9 0.8198
AT5G57160 ATLIG4 DNA ligase IV (.1) Lus10020013
[exp]
19.4 0.7498
AT1G71260 WHY2, ATWHY2 WHIRLY 2 (.1) Lus10017892
[exp]
22.2 0.7613
AT1G18040 CDKD1;3, AT;CDC... cyclin-dependent kinase D1;3 (... Lus10040530
[exp]
22.8 0.7411
AT5G24710 Transducin/WD40 repeat-like su... Lus10028093
[exp]
24.0 0.8061
AT4G26100 CKL1, CK1 casein kinase 1 (.1) Lus10027628
[exp]
27.8 0.7695
AT3G20630 PER1, ATUBP14, ... TITAN6, phosphate deficiency r... Lus10037870
[exp]
34.1 0.7840
AT5G64600 O-fucosyltransferase family pr... Lus10020882
[exp]
37.5 0.7388

Lus10003973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.