Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37670 678 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G02430 669 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G54200 494 / 1e-160 Transducin/WD40 repeat-like superfamily protein (.1) AT3G15470 485 / 3e-156 Transducin/WD40 repeat-like superfamily protein (.1) AT5G53500 303 / 2e-90 Transducin/WD40 repeat-like superfamily protein (.1) AT5G24320 302 / 1e-89 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G42010 273 / 6e-79 Transducin/WD40 repeat-like superfamily protein (.1) AT1G64610 263 / 8e-76 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G48870 255 / 1e-73 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 94 / 1e-20 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024399 [exp] 958 / 0 AT2G37670 850 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10023797 [exp] 771 / 0 AT5G02430 423 / 7e-135 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027671 [exp] 416 / 6e-132 AT5G54200 691 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039934 [exp] 415 / 1e-131 AT5G54200 691 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032436 [exp] 328 / 1e-98 AT5G24320 516 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023033 [exp] 320 / 9e-96 AT5G24320 508 / 3e-171 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017312 [exp] 316 / 4e-95 AT1G64610 439 / 4e-146 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003206 [exp] 302 / 4e-90 AT1G64610 427 / 1e-141 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10033525 [exp] 283 / 8e-84 AT1G48870 400 / 1e-132 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G084600 [exp] 841 / 0 AT2G37670 920 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G122500 [exp] 528 / 4e-172 AT3G15470 835 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G403400 [exp] 497 / 4e-160 AT3G15470 828 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G174100 [exp] 375 / 2e-116 AT5G53500 523 / 1e-177 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G144400 [exp] 335 / 3e-101 AT5G24320 516 / 4e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G009700 [exp] 328 / 5e-99 AT5G24320 621 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G086600 [exp] 328 / 8e-99 AT5G24320 514 / 1e-173 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G018200 [exp] 306 / 5e-91 AT5G24320 606 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G110500 [exp] 289 / 3e-85 AT5G24320 411 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G057600 [exp] 288 / 4e-85 AT5G24320 384 / 3e-124 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10003974 pacid=23157477 polypeptide=Lus10003974 locus=Lus10003974.g ID=Lus10003974.BGIv1.0 annot-version=v1.0 ATGGCGAATTCTGCAGCTCCTCCCAAGATGGACCGGAAGCGAACCCTGACCATGAATTGGGACGCCCTCGGCGACCACGACGACGATGACGACGACCGAT TCTTTGACTGCAACCGTCTCTCCACTGCCGTCCCAACCGACCTACCTTCCTCCGGCTCCGACGATGACGACGAATTCGAAGAATCCCGCCCTTCCTTCTC CACTTCCCTTTCCTCCCGAAACTACTCCTTCGCTGCTGCTGCCGCAGCAATGTCGCCACAATACGATATCTGGATGGCAGCCCCCGGATCGATTACCGAG CGCCGGAAACGTCTGCTCCAAGGAATGGGACTCGCCGAGGAGAAGGCCATTGTTAAGATGATGAGCAGGGAATTCTCCCGCGCCGTCACCCGCAAGATCG CTCAGGTCTCTGCTGCCGCCGCGGCCAAAGCTGCAGCCGCTTCCACCGCTCAGGTCTCTGCTGCCGCCGCGGCCAAAGCTGCAGCCGCTACATCCTCCTC GTCTCAGCCGTCCGCTTCAAACGGCGATCGTCAGCCGGACGCCGCTACTCCCACCGAATCTGAAAAGTCCGAATCTCCGAAGGCGGAAGCCGCGGAGTCC AAACACGAAAAGACGCCTTCGTCGTCCCTTCTGCCAGTGATGCTCGTACGATCGAGATCCGACGGCGACATTGAAACGATGACCAATGACAAGAAGAGGA AAGAAGAGGTGCTTGGATTGGTCTCCAAGCAACGAATCACGCGAACCACATCCCTAATTATTGTATCACACGCTAGGATTTACAACTACTCCAGCTATCC AGAATCGGTACGAATCGCCAATCAAGAAGACGGAAATGGACAATCGGCTGCAGGAGGTGGTGGCAACGGCGGAGGCGGTCACAAACAAGGCACTAAGTCG ATTGTGCCCAGCAATGGCCTAGGAGCCTTCTTCCTGATCAAGAATTTGGACACGGGTAAAGAATTTGTAGTTAACGAGTACGATCAAAACGGAAGCTGGA ACAGAGTTAGCGATCTTCAAACAGGGAAGCAACTGACCATGGAGGAATTCGAGAAAACCGTCGGGCATTCGCCGGTTGTTAAGGAGCTAATGAGGAGAGA AGACGTTGCGAACGAGAGAAAGCTCGGAGCTAACAATTACTTCTCGAAGAGCTTGAGGATGAGCAAAAGGAGAGGAGCTGCGTTGGTGAAAAGCATAAAG GGGGTGGCTCATTCAATGTCAATGAGCAATTCGAAGACCGAGAGGGACAGAGATCTTCTCCCGCCAATTCCTGATCAGAAAGGAGGAGGCAGCAAGAATT CAGCTCCTTCAGGGTGGATTAAGGTTCGGCTAACAGGGAAATCACATAAAGAGCTGAGTGCTTTGCATCTGTGTCAGGAAATTCAGGCTCACGAGGGTTC AATTTGGACGCTTAAGTTTAGCTCTGATGCACGGTATTTAGCTAGCGGCGGTGAAGATAAAGTTATACATATATGGGAAGTTCAGGAATGTGAAGTGCTG TCGTTGCATGATGGCCATTTGACTCCTCTTCATCCATCTTTGCCTAACTCGGTGGCGCCTACTCTAGTCGAGGCTGCATCAACGCCATCCTTGAAGAAGA AGAAGAAGAAAGGTTCAGCTAGCAAGAAATCGAATCCCATTCCAGAATATGTTCATGTACCTGAAGCAGTTTTTGATCTATCAGAGAAACCAATTTGCTC GTTCACTGGCCATCTTGACGATGTACTGGATTTGTCTTGGGCAGGATCTCAGCTACTCCTCTCGTCATCAATGGATAAAACTGTAAGATTATGGGACATG GAGAGCAGAAGTTGTCTGAAGATGTTTGCTCATAATGATTACGTAACTTGTATACAATTCAACCCCATGAATGACCAGTACTTCTTAAGTGGGTCACTTG ACAACAAAATCCGAATCTGGAGCGTTCCTGATAGACAACTTGTCGACTGGACTGATCTACACGAAATGGTCACAGCTGTTTGTTACACTCCAGATGGCCA GGGTGCATGGGTGGGCTCGCACAAAGGGACTTGCCGCATGTACAGTCTTGAAGACTGTAAACTGAACGAAACAGACCAAGTGGACATCCAAAAGAAAAAG TCTGGTGGGAAAAAGATAACAGGCTTTCAGTTTTCTCCAGGAAACCCATCTGAAGTCCTCATCACTTCCGCTGATTCCGGAATACGTATATTGGATGGCA AAGATGAAGTCCACAAATTCAGAGGTTTCAAAAACGTAAACAGCCAAATCACAGCTTCGTTCACCTTAAGCGGGAAGCATGTGGTGTGCGCGAGTGAAGA CTCCAACATATATGTATGGAAGCGAGAAGAGGGTCGTCCTGGAAAGGGAAAGAGCGTGATCACAAGTCGAGGGTTCGAGGCATTCCAATGCAAAGATGTG TCGGTGGCCATCCCATTTCCCGGAACAGTGAAAGGTGACCCTCCACCGATGCCAAGCAGCAGCAGCAGCACGACAACAACCAAGTCGAAACGCCAATCTT CTTCTCCAACAAAAGAAGACTCAACTTCCAGCAAAAGGAGCCAGCCGGGAGCTGTGGTTGGAGAGGAAGAGACTACTTCAGCAGCAGCTAAAAAGCCTCC GCTTCCGAAGAAGCATCACAAAGATAACAATAATAATAATAACAAGGACGATAAAGAGAGCAGTAGTAATAGTAGTATTGCTAAAGAAGAAGGCAAAGAA GAAGAAGATAACAACAACAACAACAACAACAACAAGGATGACAAAGATAGTAGTGGCCCTGAAGAGAAACGCCCAGCTGCACCTCCTGAAGAAGAGCAGT TGTCAACTTCTGGGAATGGGGAGTCGTTATCTTCTTCTGCGAAATTGGATGAACCCACGTCGATGACAATGAATCCTCCATCTTCGTCAGCTTCGAGTTG GTCTTTGTTTGAAGGGAGCAGCCATGGGAGCAACAGTAATAATCAAGCCTCGGCGTGGGGGCTTGTGATAGTGGCAGCCACATCTGGAGGTGAGATCAAA GCTTACCAGAATTTTGGTATGCCTCGTAGGATGGGTCGGCAGAGCAATCTGTTCTAG
AA sequence Show only first row Show all	>Lus10003974 pacid=23157477 polypeptide=Lus10003974 locus=Lus10003974.g ID=Lus10003974.BGIv1.0 annot-version=v1.0 MANSAAPPKMDRKRTLTMNWDALGDHDDDDDDRFFDCNRLSTAVPTDLPSSGSDDDDEFEESRPSFSTSLSSRNYSFAAAAAAMSPQYDIWMAAPGSITE RRKRLLQGMGLAEEKAIVKMMSREFSRAVTRKIAQVSAAAAAKAAAASTAQVSAAAAAKAAAATSSSSQPSASNGDRQPDAATPTESEKSESPKAEAAES KHEKTPSSSLLPVMLVRSRSDGDIETMTNDKKRKEEVLGLVSKQRITRTTSLIIVSHARIYNYSSYPESVRIANQEDGNGQSAAGGGGNGGGGHKQGTKS IVPSNGLGAFFLIKNLDTGKEFVVNEYDQNGSWNRVSDLQTGKQLTMEEFEKTVGHSPVVKELMRREDVANERKLGANNYFSKSLRMSKRRGAALVKSIK GVAHSMSMSNSKTERDRDLLPPIPDQKGGGSKNSAPSGWIKVRLTGKSHKELSALHLCQEIQAHEGSIWTLKFSSDARYLASGGEDKVIHIWEVQECEVL SLHDGHLTPLHPSLPNSVAPTLVEAASTPSLKKKKKKGSASKKSNPIPEYVHVPEAVFDLSEKPICSFTGHLDDVLDLSWAGSQLLLSSSMDKTVRLWDM ESRSCLKMFAHNDYVTCIQFNPMNDQYFLSGSLDNKIRIWSVPDRQLVDWTDLHEMVTAVCYTPDGQGAWVGSHKGTCRMYSLEDCKLNETDQVDIQKKK SGGKKITGFQFSPGNPSEVLITSADSGIRILDGKDEVHKFRGFKNVNSQITASFTLSGKHVVCASEDSNIYVWKREEGRPGKGKSVITSRGFEAFQCKDV SVAIPFPGTVKGDPPPMPSSSSSTTTTKSKRQSSSPTKEDSTSSKRSQPGAVVGEEETTSAAAKKPPLPKKHHKDNNNNNNKDDKESSSNSSIAKEEGKE EEDNNNNNNNNKDDKDSSGPEEKRPAAPPEEEQLSTSGNGESLSSSAKLDEPTSMTMNPPSSSASSWSLFEGSSHGSNSNNQASAWGLVIVAATSGGEIK AYQNFGMPRRMGRQSNLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37670			Transducin/WD40 repeat-like su...		Lus10003974 [exp]	0	1
AT1G76140			Prolyl oligopeptidase family p...		Lus10034558 [exp]	5.2	0.8545
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10032328 [exp]	7.2	0.8129
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10028201 [exp]	8.9	0.8356
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10013851 [exp]	11.1	0.7703
AT5G38260			Protein kinase superfamily pro...		Lus10027119 [exp]	11.2	0.8099
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001010 [exp]	11.6	0.8229
AT5G12230		MED19A	unknown protein		Lus10017449 [exp]	15.5	0.7927
AT2G26390			Serine protease inhibitor (SER...		Lus10005087 [exp]	18.8	0.7927
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Lus10014175 [exp]	21.4	0.7993
AT4G26540			Leucine-rich repeat receptor-l...		Lus10005848 [exp]	24.9	0.7520

Compare expression of checked genes

Lus10003974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.