Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09310 99 / 1e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G099700 [exp] 100 / 1e-27 AT3G09310 148 / 2e-46 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01809 [flax] [poplar] YidD Putative membrane protein insertion efficiency factor
Representative CDS sequence Show only first row Show all	>Lus10003975 pacid=23157483 polypeptide=Lus10003975 locus=Lus10003975.g ID=Lus10003975.BGIv1.0 annot-version=v1.0 ATGTCGATTGTTCTTCCGCTGAAGTTGCGCTCGTCTGCAATTACAAACGTGCCTCACCCCCAATCGGTCTTTCTCAATTCCATCCAGACAATCGGAGCCA GTCGCCGAAGTTTTAACATTTCTATCAAAACCCTAACGGGGAAGGAAAGTCGCTGGCGGAGGTTAGTTGCTTTCCGCAGCAGCGGGGATTCTGACCAAAC CAATGTAGAAGAAGAAGAAGAAGAAGGGGAAATATCGCCGGTGCTGCCGAGGAGTTGCAGATATGTGCCGACGTGCAGCGAGTACTCAATGATAGCTTAT AACAAGTATGGGTTTAGTAAAGGAACAATCTTGACTGTATGCCGACTCTGTCGCTGCAATCCCCTTGGTTGGTATACTCACTCTAATCTGAAACCTTCCT TAATACTTGTTAACTGGGTTCTTACTTGCTTTGTTCAACCAGGTGGGTCTGGTTTTGATCCTCCAAGATGGTTTGGTGAGGACCCTCCTCCCAAACAATG A
AA sequence Show only first row Show all	>Lus10003975 pacid=23157483 polypeptide=Lus10003975 locus=Lus10003975.g ID=Lus10003975.BGIv1.0 annot-version=v1.0 MSIVLPLKLRSSAITNVPHPQSVFLNSIQTIGASRRSFNISIKTLTGKESRWRRLVAFRSSGDSDQTNVEEEEEEGEISPVLPRSCRYVPTCSEYSMIAY NKYGFSKGTILTVCRLCRCNPLGWYTHSNLKPSLILVNWVLTCFVQPGGSGFDPPRWFGEDPPPKQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09310			unknown protein		Lus10003975 [exp]	0	1
AT1G16650			S-adenosyl-L-methionine-depend...		Lus10013723 [exp]	6.0	0.8418
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10016716 [exp]	17.3	0.8373
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10006095 [exp]	20.4	0.8012
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10039457 [exp]	20.5	0.7977
AT5G14770			Tetratricopeptide repeat (TPR)...		Lus10026206 [exp]	29.0	0.7935
AT5G09390			CD2-binding protein-related (....		Lus10009320 [exp]	30.8	0.7528
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10024895 [exp]	33.3	0.7916
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10010121 [exp]	37.0	0.7803
AT3G27930			unknown protein		Lus10008782 [exp]	38.6	0.7689
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Lus10030445 [exp]	39.2	0.7906

Compare expression of checked genes

Lus10003975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.