Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09430 256 / 1e-84 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000245 [exp] 402 / 7e-144 AT3G09430 235 / 5e-78 unknown protein Lus10023771 [exp] 211 / 5e-69 AT3G09430 63 / 4e-12 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G084500 [exp] 284 / 7e-96 AT3G09430 223 / 6e-72 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003976 pacid=23157452 polypeptide=Lus10003976 locus=Lus10003976.g ID=Lus10003976.BGIv1.0 annot-version=v1.0 ATGAACTCACCTTCCTCAATCGACGACAATGACCTTGACGACGCTGCTCTTTGGGCTGTAATCGACTCCGCAGCAGCCTCCCATTCCTGCTCTTCCTCCA GCAACCAGCTCATCGCCGTCAAACGCCGTAACTTCCACTCGCCGATCTCCAAGTTATCGCCGCAGCAGCCATCGATGTTCAATCAGAGCTCAAAATACAA TTCCAATGCCATTTCCCCTTACTCAGATCCCTACCGGAGCAGGCCTAACAAGATAGCCAGGTCCTGCGTCTCCGATGTGAGCGAGAGTACGAGTCCTCTG GCTCTGGTTAGGACGCCGATTCCTACCATGACGGCGCACCCCTCGCCGGAAGCTTACTTGTCCCCGCAGATAGGAAGGTATATGGTGAATGATTGTGGTG ATGGCAGATTCGATGTATCCCTACCTGAGAACTGCGTTAAGCAGCACAGTGAAGAGAAGGAAGTAACGAGACATTGTTTGGATTTGAAGTTCCCTTCGGT CTCTTTGTTCAAGGACTACCAGAATGCTGCGATGGCGATTCTGGAGAAGTCTGATTATGTGATGATTTCAGGACATCCTTTCATTAAGAAGTCAGGTTGG AGGAAGATATCCTGTTTCTTCAATCTGTCCTTTGAAATCAAAGATAAGAGCATTGAATATGATGACGACCGAAATGTTCAACGAGCTGAATTTGTTGTTC GAGCTCATATGCAAGGTGGAAGGTTCTCTGACGGTTGGGGCTCATGTGAAAGGCGCGAGAAGCGATTTTCAAAACCTAACCATGATATCCCTAGCACAGC AGAAACTCGGGCCAAGAACAAAGCTTGCCAGGACCTGCTTGGGATTGGAGAGTATCGACCCGGTGCAAACCAGTCTCAGCACCAACAAACTTAG
AA sequence Show only first row Show all	>Lus10003976 pacid=23157452 polypeptide=Lus10003976 locus=Lus10003976.g ID=Lus10003976.BGIv1.0 annot-version=v1.0 MNSPSSIDDNDLDDAALWAVIDSAAASHSCSSSSNQLIAVKRRNFHSPISKLSPQQPSMFNQSSKYNSNAISPYSDPYRSRPNKIARSCVSDVSESTSPL ALVRTPIPTMTAHPSPEAYLSPQIGRYMVNDCGDGRFDVSLPENCVKQHSEEKEVTRHCLDLKFPSVSLFKDYQNAAMAILEKSDYVMISGHPFIKKSGW RKISCFFNLSFEIKDKSIEYDDDRNVQRAEFVVRAHMQGGRFSDGWGSCERREKRFSKPNHDIPSTAETRAKNKACQDLLGIGEYRPGANQSQHQQT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09430			unknown protein		Lus10003976 [exp]	0	1
AT3G27640			Transducin/WD40 repeat-like su...		Lus10032126 [exp]	15.9	0.8209
AT4G22860			Cell cycle regulated microtubu...		Lus10007022 [exp]	24.8	0.8110
AT2G20980		MCM10	minichromosome maintenance 10 ...		Lus10019785 [exp]	27.7	0.8006
AT4G35880			Eukaryotic aspartyl protease f...		Lus10028410 [exp]	31.2	0.8002
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10030269 [exp]	55.0	0.7916
AT3G09430			unknown protein		Lus10000245 [exp]	56.0	0.7434
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10040404 [exp]	89.8	0.7644
AT1G71750		HGPT	Hypoxanthine-guanine phosphori...		Lus10024262 [exp]	104.9	0.7049
AT4G21610		LOL2	lsd one like 2 (.1)		Lus10007343 [exp]	124.8	0.7482
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10007152 [exp]	207.4	0.7200

Compare expression of checked genes

Lus10003976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.