Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53710 442 / 3e-153 AGD6 ARF-GAP domain 6 (.1.2) AT2G37550 440 / 2e-152 ASP1, AGD7 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) AT4G17890 126 / 2e-32 UBP20, AGD8 ARF-GAP domain 8 (.1.2) AT5G46750 125 / 5e-32 AGD9, AGD8 ARF-GAP domain 9 (.1) AT2G35210 119 / 5e-30 RPA, AGD10, MEE28 MATERNAL EFFECT EMBRYO ARREST 28, root and pollen arfgap (.1.2) AT5G54310 96 / 3e-21 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT4G05330 94 / 4e-21 AGD13 ARF-GAP domain 13 (.1) AT3G17660 91 / 1e-20 AGD15 ARF-GAP domain 15 (.1) AT4G21160 90 / 1e-19 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT3G07940 87 / 1e-18 Calcium-dependent ARF-type GTPase activating protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023765 [exp] 606 / 0 AT2G37550 507 / 4e-178 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10023766 [exp] 516 / 0 AT2G37550 485 / 4e-170 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10003977 [exp] 229 / 8e-73 AT2G37550 215 / 4e-67 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10038317 [exp] 152 / 2e-44 AT2G37550 166 / 5e-50 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10000903 [exp] 123 / 3e-31 AT4G17890 469 / 3e-165 ARF-GAP domain 8 (.1.2) Lus10004562 [exp] 124 / 4e-31 AT4G17890 512 / 0.0 ARF-GAP domain 8 (.1.2) Lus10004561 [exp] 119 / 7e-30 AT4G17890 451 / 2e-158 ARF-GAP domain 8 (.1.2) Lus10012991 [exp] 107 / 4e-28 AT3G53710 103 / 5e-27 ARF-GAP domain 6 (.1.2) Lus10004125 [exp] 109 / 8e-27 AT4G17890 283 / 4e-94 ARF-GAP domain 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G095100 [exp] 458 / 2e-159 AT3G53710 462 / 9e-161 ARF-GAP domain 6 (.1.2) Potri.006G084000 [exp] 457 / 6e-159 AT3G53710 498 / 8e-175 ARF-GAP domain 6 (.1.2) Potri.001G142100 [exp] 125 / 9e-32 AT4G17890 535 / 0.0 ARF-GAP domain 8 (.1.2) Potri.003G092300 [exp] 122 / 1e-30 AT4G17890 525 / 0.0 ARF-GAP domain 8 (.1.2) Potri.012G036900 [exp] 93 / 2e-21 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1) Potri.001G406300 [exp] 96 / 3e-21 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1) Potri.004G035800 [exp] 94 / 2e-20 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G044100 [exp] 94 / 2e-20 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G127000 [exp] 94 / 2e-20 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G372000 [exp] 89 / 1e-19 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01412 [flax] [poplar] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Lus10003978 pacid=23157470 polypeptide=Lus10003978 locus=Lus10003978.g ID=Lus10003978.BGIv1.0 annot-version=v1.0 ATGGCAGCAGCTCAACGCCTCAGGCATATGCAATCGCGACCTGCGAACAAAATCTGCGTGGACTGCTCCCAGAAGAATCCTCAATGGGCCTCCGTCTCCT ACGGCATTTTCATGTGCCTGGAATGCTCAGGCAAGCATCGTGGCCTTGGCGTCCACATCTCCTTCGTTCGATCCGTCACCATGGACTCATGGTCCGAGAT CCAGATCAAGAAGATGGAAGCAGGAGGAAATGATAGCCTCAACTCTTTTCTTTCACAGAGAGGGATTTCTAAGGAGACCGACATCGTCTCCAAGTACAAC AGCAAAGCCGCCGCCGCATACCGCGACCGGATCCAGGCGTCGGCCGAGGGAAAGCCGTGGCGCGAAACTCCCGCCACCAAGGAAATGATTGGTGGAAGTG GTGGAGGAAGGAGGCCTCCTCTCTCTCAATCCGCACCGAAGGATAATGGTGGATGGGATAGTTGGGATAATGATGACGCGTTTAGATCTTCAGATGACAT GAGGAGGAATCACACAGTTAGTGATTTTAGAGCTAATGTTGGTGGCCGCGGTGGAGGAATGGGCGAGGGTCGGCCAAGATCAAAATCAACAGAGGATATT TATACGAGATCGCAATTGGAGGCGTCTGCGGCTAGTAAGGAAACATTTTTCGCCAGAAGAATGGCAGAGAATGAATCGAGGCCTGATGGTATTCCGCCAT CGCAAGGTGGCAAGTATGTTGGGTTTGGATCGGGTCCTGCTCCGTCCCAGATGAATAATTCACAACCAGATGTTTTATCGGTTGTCTCTCAGGGATTTGG AAAGTTGTCTCTGGTTGCGGCTTCAGCAGCTAGTGTTGTTCAAGCTGGCACAAAAGAGATCTCGGACAAGGTGAAGGAGGGTGGTTATGATCAAAGGGTG AACGAAACTGTCAATGTTGTAACCGCAAAAACAACTGAGATTGGACATAGAACATGGGGCATCATGAAAGGTGTGATGGCAATGGCTACTCTAAAGGTCG AGGAATATGCTAAAGATGGTGGGTGGAAGGATGAGAATGAGAGTAATGGATACAATCATGAGGTCAATAAACAACAAAATAGTGGATGGAATTCAAATGC TGGCGCCGGACAGTCATCGTCAGCTAGAAATAATAACTCAAGCTGGAATGATTGGGATCAGAAAGAGAGCAGCAGTCGTGATGGGTGGGCTGGATGGGAT GATGGAAAAGATGACTTCCACCAGTCAGGAAATGATAAGCTATTCACTGGGAAATCAGATTCCACATGGACTGGCGGTGGTTTTGCTTAA
AA sequence Show only first row Show all	>Lus10003978 pacid=23157470 polypeptide=Lus10003978 locus=Lus10003978.g ID=Lus10003978.BGIv1.0 annot-version=v1.0 MAAAQRLRHMQSRPANKICVDCSQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDSLNSFLSQRGISKETDIVSKYN SKAAAAYRDRIQASAEGKPWRETPATKEMIGGSGGGRRPPLSQSAPKDNGGWDSWDNDDAFRSSDDMRRNHTVSDFRANVGGRGGGMGEGRPRSKSTEDI YTRSQLEASAASKETFFARRMAENESRPDGIPPSQGGKYVGFGSGPAPSQMNNSQPDVLSVVSQGFGKLSLVAASAASVVQAGTKEISDKVKEGGYDQRV NETVNVVTAKTTEIGHRTWGIMKGVMAMATLKVEEYAKDGGWKDENESNGYNHEVNKQQNSGWNSNAGAGQSSSARNNNSSWNDWDQKESSSRDGWAGWD DGKDDFHQSGNDKLFTGKSDSTWTGGGFA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10003978 [exp]	0	1
AT5G66580			unknown protein		Lus10019659 [exp]	2.0	0.8350
AT4G30010			unknown protein		Lus10025458 [exp]	3.5	0.8678
AT5G36230			ARM repeat superfamily protein...		Lus10042703 [exp]	4.2	0.8076
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Lus10040821 [exp]	5.5	0.8475
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Lus10027386 [exp]	6.5	0.8465
AT4G26620			Sucrase/ferredoxin-like family...		Lus10016627 [exp]	8.8	0.7688
AT5G36230			ARM repeat superfamily protein...		Lus10029667 [exp]	14.9	0.7712
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Lus10000536 [exp]	15.3	0.8014
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10000637 [exp]	18.4	0.8321
					Lus10020868 [exp]	25.0	0.7478

Compare expression of checked genes

Lus10003978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.