Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09470 510 / 3e-179 Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023760 [exp] 730 / 0 AT3G09470 611 / 0.0 Major facilitator superfamily protein (.1.2) Lus10006288 [exp] 45 / 0.0002 AT1G18010 649 / 0.0 Major facilitator superfamily protein (.1) Lus10019528 [exp] 44 / 0.0002 AT1G18010 659 / 0.0 Major facilitator superfamily protein (.1) Lus10020560 [exp] 44 / 0.0002 AT1G18010 573 / 0.0 Major facilitator superfamily protein (.1) Lus10043371 [exp] 44 / 0.0002 AT1G18010 657 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G083700 [exp] 549 / 0 AT3G09470 541 / 0.0 Major facilitator superfamily protein (.1.2) Potri.012G005100 [exp] 45 / 0.0001 AT1G18010 630 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF05978 [flax] [poplar] UNC-93 Ion channel regulatory protein UNC-93
Representative CDS sequence Show only first row Show all	>Lus10003979 pacid=23157458 polypeptide=Lus10003979 locus=Lus10003979.g ID=Lus10003979.BGIv1.0 annot-version=v1.0 ATGGATGTTGCTAATCCCAGAGACGAAGAGTCACCGTTGGTCCCTGCTGTTGACCGGAATCTGCATCAGCTTCCTAAACCGCCCAAGAACCACACTAGAG ATGTCCATATTCTGAGCTCCGCCTTCTTGCTCATTTTTCTCGCTTATGGCGCTGCTCAGAATCTCGAGACTACAGTCAATTCGCAAGGGGATTTGGGGAC GATTTCGCTGGGGATACTGTACGTGTCCTTTGCCGTCTTCTCGGTGACTGCGTCTTTGGTGGTTCGAGCTTTGGGTTCTAAGTATGCGATTGTTCTTGGG ACTACTGGGTATTGGCTGTTTATTGCTGCTAACCTGAAGCCCACATGGTATACTTTGGTACCAGCTTCTGTCTACTTAGGCTTTGCTGCATCAATCATAT GGGTTGGGCAGGGTACATATCTCACTTCTACAGCACGTAGTCATGCCAGTGATCACAGTTTGCATGAACCTACTGTTATTGGCAGCTTCAATGGAGAGTT TTGGGGCATGTTTGCTGCTCATCAGTTTGTAGGAAACCTTATCTCCCTTGCTCTTCTGAAGGATGGAACGGATGGAACTACGAAGGGCACAACGCTGTTG TTTGTTGTGTTTCTTGGATTCATGACCATAGGTACAATTCTCATGTGTTTCATAAGCAAAAGGGACGGTAAAAGAGATGATGCAGCAACAGAATCTCCCA GCAGTTTCTGTTCTTCTCTCGCATCACTCACGACGAGTATCATCACCCCTTTGCTTGACTTACGAATGTGGTTAATCATCCCTCTTATAGCTTACTCAGG ATTACAGCAGGCATTTGTATGGGCTGAATTTACAAAAGAGATTGTGAAGCCAGCCATTGGCGTCTCGGGTGTTGGAGGTGCTATGGCAGTTTATGGGGCT TTTGATACTATCTGTGCATTGACAGCTGGTCGGCTTACATCCGGTCTTCGTTCAGTTACTTGGATAGTATCCTTTGGATCGATTCTTCAGGCTCTTGTCT TCCTCTGGATTCTGCTCAACTATAGTTTGACCAGCGGAGTATTGGGCGTTTTATACCCACTTATCATGGCAGCCATGCTGGGTATTGGCGATGGAGTGCT CAACACACAGCTCAATGCTTTGCTTGGCATAATTTTCAAGCAAGATATGGAAGGAGCGTTTGCTCAACTGAAGCTCTGGCAGAGTGCTTCGATCGCAGTA GTCTTCTTCCTTAGCCCGTGTATCTCGCTGCAGGCCATGCTCCTGATCATGCTAGCCGCGTTACTAATATCAGCAGCTTCCTTCTTGTTTTTGTCTCTCC AGGCGAAGAAAATAAAAGAAAAGAAGGAGGAGAAGGATGATGGTGTTAGTACATACATCAAGACGTTGAGGGCAATGAAGCTGTTAGCGAAGCGACGGAC GGAGTCGAGGGAAGCGAGGTCGAGTTCGAGGACATCAATGTTGGAAGTCGTGGAGGATAAGACGCTTGGCTTGGTTAGCAGCAGTGATGTTGGTCAACGA TGA
AA sequence Show only first row Show all	>Lus10003979 pacid=23157458 polypeptide=Lus10003979 locus=Lus10003979.g ID=Lus10003979.BGIv1.0 annot-version=v1.0 MDVANPRDEESPLVPAVDRNLHQLPKPPKNHTRDVHILSSAFLLIFLAYGAAQNLETTVNSQGDLGTISLGILYVSFAVFSVTASLVVRALGSKYAIVLG TTGYWLFIAANLKPTWYTLVPASVYLGFAASIIWVGQGTYLTSTARSHASDHSLHEPTVIGSFNGEFWGMFAAHQFVGNLISLALLKDGTDGTTKGTTLL FVVFLGFMTIGTILMCFISKRDGKRDDAATESPSSFCSSLASLTTSIITPLLDLRMWLIIPLIAYSGLQQAFVWAEFTKEIVKPAIGVSGVGGAMAVYGA FDTICALTAGRLTSGLRSVTWIVSFGSILQALVFLWILLNYSLTSGVLGVLYPLIMAAMLGIGDGVLNTQLNALLGIIFKQDMEGAFAQLKLWQSASIAV VFFLSPCISLQAMLLIMLAALLISAASFLFLSLQAKKIKEKKEEKDDGVSTYIKTLRAMKLLAKRRTESREARSSSRTSMLEVVEDKTLGLVSSSDVGQR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09470			Major facilitator superfamily ...		Lus10003979 [exp]	0	1
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Lus10036028 [exp]	3.0	0.7375
AT5G62500		ATEB1B	end binding protein 1B (.1)		Lus10024235 [exp]	7.1	0.7372
AT3G27110			Peptidase family M48 family pr...		Lus10032044 [exp]	7.5	0.7633
					Lus10024153 [exp]	16.2	0.7528
					Lus10039517 [exp]	16.7	0.7190
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10000754 [exp]	20.6	0.7486
AT3G27110			Peptidase family M48 family pr...		Lus10035210 [exp]	26.7	0.7400
AT4G14145			unknown protein		Lus10040412 [exp]	29.2	0.6616
AT5G39450			F-box family protein (.1)		Lus10037697 [exp]	29.7	0.6479
AT3G45740			hydrolase family protein / HAD...		Lus10023480 [exp]	30.7	0.7414

Compare expression of checked genes

Lus10003979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.