Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37510 156 / 9e-50 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G54580 105 / 2e-29 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G06210 89 / 3e-23 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT1G18630 86 / 6e-22 GR-RBP6 glycine-rich RNA-binding protein 6 (.1) AT3G46020 84 / 2e-21 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G13850 82 / 2e-20 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT3G26420 83 / 8e-20 ATRZ-1A RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT1G73530 81 / 1e-19 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G39260 77 / 3e-19 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT3G20930 82 / 4e-19 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023758 [exp] 246 / 4e-85 AT2G37510 164 / 9e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10014802 [exp] 110 / 1e-29 AT5G54580 176 / 2e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10003593 [exp] 109 / 3e-29 AT5G54580 174 / 6e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032591 [exp] 81 / 7e-20 AT4G13850 157 / 5e-50 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10013306 [exp] 79 / 3e-19 AT5G06210 94 / 3e-25 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10016639 [exp] 79 / 4e-19 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10029426 [exp] 83 / 6e-19 AT5G27720 190 / 2e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Lus10027035 [exp] 81 / 1e-18 AT3G20930 360 / 8e-123 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10043158 [exp] 77 / 2e-18 AT4G13850 154 / 1e-48 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G130300 [exp] 102 / 2e-28 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G409800 [exp] 102 / 3e-28 AT5G54580 174 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G208500 [exp] 92 / 2e-24 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G038200 [exp] 87 / 4e-22 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G022280 [exp] 84 / 4e-21 AT3G20930 203 / 2e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G207100 [exp] 84 / 1e-20 AT3G26420 175 / 7e-55 RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Potri.001G319900 [exp] 82 / 3e-20 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.017G059000 [exp] 81 / 3e-20 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.010G237200 [exp] 83 / 2e-19 AT3G20930 429 / 5e-150 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G022200 [exp] 83 / 2e-19 AT3G20930 427 / 3e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10003980 pacid=23157456 polypeptide=Lus10003980 locus=Lus10003980.g ID=Lus10003980.BGIv1.0 annot-version=v1.0 ATGGCGTTCGCATCCATCTTCCGACGGTCTTTGGCCGGAGCTTCATCATCTCATTCTTCAATTGTTGGAAACCTGTTCGCTTCTACCCGTCTTTACGGAA CTCTCACTTCCCCCAAGCTCTTCATTAGCGGCCTCTCCAGGTTGACAACTGATGAGAAGCTCAAGGAGGCATTTGCACCTTTTGGCCATCTTGTTGAAGC TAAAGTGATTACGGATAGAGCAAGCGGGAGATCTAAGGGCTTCGGGTTTGTGACATATGATACAATAGAGGATGCCGAGAAAGCTAAAGCAGAAATGAAC GCCAAGTTCTTGGACGGATGGGTTATATTCGTTGACCCTGCAAAGCCTAGGGAGTTTGGCTTAAGACCACCACCACCTCAGCAGCAGCACCAGCAGCAGG ATCCAGCTGCTGACCCGTCCGGGCTTGGATTCAGAACTAACAAGACGGTTGGATGGTGCGGTTAA
AA sequence Show only first row Show all	>Lus10003980 pacid=23157456 polypeptide=Lus10003980 locus=Lus10003980.g ID=Lus10003980.BGIv1.0 annot-version=v1.0 MAFASIFRRSLAGASSSHSSIVGNLFASTRLYGTLTSPKLFISGLSRLTTDEKLKEAFAPFGHLVEAKVITDRASGRSKGFGFVTYDTIEDAEKAKAEMN AKFLDGWVIFVDPAKPREFGLRPPPPQQQHQQQDPAADPSGLGFRTNKTVGWCG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37510			RNA-binding (RRM/RBD/RNP motif...		Lus10003980 [exp]	0	1
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10028964 [exp]	2.8	0.8735
AT2G03190		ASK16	SKP1-like 16 (.1)		Lus10031747 [exp]	3.2	0.9110
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10027728 [exp]	3.2	0.8714
AT2G41945			unknown protein		Lus10021080 [exp]	9.3	0.8977
AT2G37860		LCD1	LOWER CELL DENSITY 1, Protein ...		Lus10012657 [exp]	9.5	0.8692
AT2G01710			Chaperone DnaJ-domain superfam...		Lus10012736 [exp]	13.4	0.8389
AT1G49870			unknown protein		Lus10013902 [exp]	13.5	0.8178
AT4G32430			Pentatricopeptide repeat (PPR)...		Lus10021355 [exp]	15.6	0.8820
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Lus10014308 [exp]	20.6	0.8651
AT2G03170		ASK14	SKP1-like 14 (.1)		Lus10031171 [exp]	22.4	0.8468

Compare expression of checked genes

Lus10003980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.