Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37500 595 / 0 arginine biosynthesis protein ArgJ family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023757 [exp] 380 / 1e-132 AT2G37500 275 / 2e-91 arginine biosynthesis protein ArgJ family (.1.2) Lus10023756 [exp] 216 / 9e-69 AT2G37500 253 / 4e-84 arginine biosynthesis protein ArgJ family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G115900 [exp] 624 / 0 AT2G37500 615 / 0.0 arginine biosynthesis protein ArgJ family (.1.2) Potri.015G112400 [exp] 168 / 1e-50 AT2G37500 125 / 2e-34 arginine biosynthesis protein ArgJ family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0635 [flax] [poplar] DmpA_ArgJ PF01960 [flax] [poplar] ArgJ ArgJ family
Representative CDS sequence Show only first row Show all	>Lus10003981 pacid=23157473 polypeptide=Lus10003981 locus=Lus10003981.g ID=Lus10003981.BGIv1.0 annot-version=v1.0 ATGTACGCTTGTGCTCCACCTCCTACCTATCTGCCTCTTAAACTTTCTCCTCAACTACGAACCTCGAAGCGGCTGAGCTCGTTCCGTCTGGTTAACAGAG AGTTTAAGGTATTTGCAACTAGTATGGATGAGGGTGCTAATTACATACCCGCAGCTCCTATTTTCCTTCCTCAAGGACCCTGGAAGGAGATTCCTGGAGG TATTACAGCACCTAACGGATTCAAAGCTGCTGGTATTTATGGCGGTTTGAGAGCCAAAGGGGAGAAACCTGATCTCGCACTTGTCACTTGTGATGTTGAT GCCATAGCTGCAGGGGCATTTACTACGAACATGGTTGCTGCAGCACCTGTACTGTATTGTAAAAATATATTAGAGTTATCGAAAACGGCGCGTGCCGTGT TAATAAATGCTGGCCAAGCAAATGCAGCAACCGGAGATGCAGGTTATCAGGACGTGCTAGAATGTGCTGATGCTATTGCTAAGGCAGGAAGCTATGGACT TTGGTTTCTGCTTCTTAAAATAAATCCGCATGAAGTTCTTATTGAATCCACAGGTGTGATTGGTCAAAGAATAAAGAAGGAAGCTCTTCTAAATTCACTT CCAAAACTGGTTAGCTCACTCTCAACCTCCAATGAAGGGGCAGGTTCAGCAGCGGTAGCAATTACAACAACCGACCTTGTGAGCAAGAGTGTAGCAGTTG AGTCCCAGGTTGGAGGAACAGATATAAGAATTGGGGGAATTGCGAAAGGATCCGGTATGATACATCCAAATATGGCCACCATGCTTGGCGTAATAACAAC TGATGCCCTTGTGGAAGGTGAAGTCTGGAGAAAGATGGTGAAGACTGCTGTTAGTCGTAGCTTCAACCAAATAACGGTAGATGGGGACACCAGTACAAAT GATACAGTCATTGCTTTGGCTAGTGGGTTATCCGGAACAACCATGGTCTCTTCTTTAGACAGCCATGAAGCTGAACAACTTCAAGCAGGCCTTGATGCTG TGATGCAAGGTCTTGCCAAATCGATAGCTTGGGATGGAGAAGGAGCTACATGTTTGATTGAGGCATCCGCTGCTGGCTACGCAGGGATTCCATTCGACCA AAACAAGCTGCGTATATCGCTAGGGGACACTCTACTAATGAACAATGGACAACCTTTGTCGTTTGACAGGGATGGTGCAAGCAATTACCTGAAGAAGGCA GGTGAGAGCCATGGCACTGTTGGAATCCAGATATCTGTTGGAGATGGAGGTGGGGGCGGGCAAGCATGGGGGTGCGATTTGAGCTATGATTATGTGAAGA TTAATGCAGAATACACAACATAG
AA sequence Show only first row Show all	>Lus10003981 pacid=23157473 polypeptide=Lus10003981 locus=Lus10003981.g ID=Lus10003981.BGIv1.0 annot-version=v1.0 MYACAPPPTYLPLKLSPQLRTSKRLSSFRLVNREFKVFATSMDEGANYIPAAPIFLPQGPWKEIPGGITAPNGFKAAGIYGGLRAKGEKPDLALVTCDVD AIAAGAFTTNMVAAAPVLYCKNILELSKTARAVLINAGQANAATGDAGYQDVLECADAIAKAGSYGLWFLLLKINPHEVLIESTGVIGQRIKKEALLNSL PKLVSSLSTSNEGAGSAAVAITTTDLVSKSVAVESQVGGTDIRIGGIAKGSGMIHPNMATMLGVITTDALVEGEVWRKMVKTAVSRSFNQITVDGDTSTN DTVIALASGLSGTTMVSSLDSHEAEQLQAGLDAVMQGLAKSIAWDGEGATCLIEASAAGYAGIPFDQNKLRISLGDTLLMNNGQPLSFDRDGASNYLKKA GESHGTVGIQISVGDGGGGGQAWGCDLSYDYVKINAEYTT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37500			arginine biosynthesis protein ...		Lus10003981 [exp]	0	1
AT2G19940			oxidoreductases, acting on the...		Lus10003050 [exp]	2.4	0.9490
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10025493 [exp]	14.9	0.9458
AT4G13430		ATLEUC1, IIL1	isopropyl malate isomerase lar...		Lus10014463 [exp]	15.7	0.9370
AT1G07160			Protein phosphatase 2C family ...		Lus10041072 [exp]	17.9	0.9417
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10023266 [exp]	18.5	0.9399
AT1G66880			Protein kinase superfamily pro...		Lus10028494 [exp]	18.8	0.9459
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023900 [exp]	24.1	0.9431
AT1G15170			MATE efflux family protein (.1...		Lus10018134 [exp]	24.7	0.9404
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10031079 [exp]	25.7	0.9385
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10030022 [exp]	29.7	0.9389

Compare expression of checked genes

Lus10003981 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.