Plant FIBer expression Database

Lus10003982 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G37480 57 / 1e-09 unknown protein
AT3G53670 54 / 9e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023755
[exp]
317 / 3e-110 AT2G37480 90 / 4e-22 unknown protein
Lus10024420
[exp]
153 / 4e-46 AT2G37480 67 / 1e-13 unknown protein
Lus10025314
[exp]
151 / 5e-45 AT2G37480 62 / 9e-12 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G082100
[exp]
82 / 1e-18 AT3G53670 52 / 3e-08 unknown protein
PFAM info
Representative CDS sequence
>Lus10003982 pacid=23157492 polypeptide=Lus10003982 locus=Lus10003982.g ID=Lus10003982.BGIv1.0 annot-version=v1.0
ATGGACGTTGGCCACCGTGGTGCTTCTGGTGTGGATGATCTGGTAGATGAGGACGACTTTAAACTTGGGAAGTTGAGATCTGAAATTAGTACCCAAGTAA
CAGATTCATTGGATGGAGATGATAACAATGATGAATGCAAGGGTTCTGAAGCAGCTGATCCATCTGGGCCTGAACCGGCTGTCACTGAGTGCTTGGAGAA
ATCAGCAACAAATCCTTGTTCTGGCGATAAAGCATCTAATCTAGGTACTTCAGATGATGAGGACCCAGACACTGAATTACAGCCGCCTTTCTCCAAGGAG
CCCCTGCAGCGCTCCAAGTCAATGCCGCTTGTATCTGCCATGAAAGGTAGCAGGGAGAAAGTGGGGAAGGAAGTAAGGCAGCTGAGCGTAACATGGGCTC
CTGATGTGTATGATCCTGTTCCTAATTCTCTCTGTCACACGGTTAATAGCAGCAGCAGTAGCAGTAAAAAGAAATGGAGGAGGGACAGAGAGAAAGATAA
GAAGAATGGAAAGAAGGGACAGAAGGGCAGCAACAACTCTTCTTCTCGAGGGGCCAGTAGTAAGGACAAGAAGCAAGCAAGGAGAAAGGCCGATAGGTCG
TATAAGGTGCATGATATCCGTGAGGATGCATACGCTGGTGACCCGTGTGGATACGATGTGGCCAGCTCGGACATGTGTGGTAGCAGCTTCCTGAAGAAGA
CCGTAAGAGAGTTCCATTACCCAGTTGCTGAGGCTCTATGA
AA sequence
>Lus10003982 pacid=23157492 polypeptide=Lus10003982 locus=Lus10003982.g ID=Lus10003982.BGIv1.0 annot-version=v1.0
MDVGHRGASGVDDLVDEDDFKLGKLRSEISTQVTDSLDGDDNNDECKGSEAADPSGPEPAVTECLEKSATNPCSGDKASNLGTSDDEDPDTELQPPFSKE
PLQRSKSMPLVSAMKGSREKVGKEVRQLSVTWAPDVYDPVPNSLCHTVNSSSSSSKKKWRRDREKDKKNGKKGQKGSNNSSSRGASSKDKKQARRKADRS
YKVHDIREDAYAGDPCGYDVASSDMCGSSFLKKTVREFHYPVAEAL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G37480 unknown protein Lus10003982
[exp]
0 1
AT1G02170 AtMCP1b, ATMC1,... LSD ONE LIKE 3, ARABIDOPSIS TH... Lus10010764
[exp]
1.0 0.9224
AT1G16810 unknown protein Lus10034837
[exp]
2.4 0.9221
AT5G11500 unknown protein Lus10037899
[exp]
6.5 0.9212
Lus10023403
[exp]
7.4 0.9098
AT3G60540 Preprotein translocase Sec, Se... Lus10010009
[exp]
8.4 0.9101
AT4G14385 unknown protein Lus10003559
[exp]
8.8 0.9129
AT4G21865 unknown protein Lus10014471
[exp]
9.5 0.8957
AT2G29410 ATMTPB1, MTPB1 metal tolerance protein B1 (.1... Lus10016487
[exp]
13.8 0.9178
AT5G63030 GRXC1 glutaredoxin C1, Thioredoxin s... Lus10001237
[exp]
14.1 0.9044
AT5G47090 unknown protein Lus10035047
[exp]
15.4 0.9046

Lus10003982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.